Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49283

Metabolite ID
P49283
Deionized mass
386.2397 Da
Average m/z
387.2485
Average RT
25.9838
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
116
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

116 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 4Chr01:50404781–50436297 (-)2.146e-12
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)5.79e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)2.356e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.689e-12
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)9.721e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.071e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.625e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)8.537e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.561e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.561e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.602e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)5.886e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.507e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.045e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)2.146e-12
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)2.146e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.582e-18
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.582e-18
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)9.42e-11
Glyma.02G067600 hypothetical protein NA 1Chr02:5975111–5976381 (+)6.527e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)6.411e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.534e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.63e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.98e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.755e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.318e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.321e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.8e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.954e-15
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.271e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.27e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.271e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.785e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.963e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.963e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.963e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)7.199e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.835e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.426e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.054e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.88e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)8.589e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)9.925e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.012e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)4.596e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)1.935e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)2.938e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.615e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.997e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.256e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.256e-11
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)5.295e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.686e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)5.699e-13
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)4.004e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.18e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.232e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.291e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.556e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.556e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.556e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.556e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.587e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.092e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)8.959e-14
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)9.965e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.501e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.501e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.501e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.469e-17
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.469e-17
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.412e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.412e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.99e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.99e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.688e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.344e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.537e-17
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.886e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.506e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.689e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.741e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.384e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.384e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.561e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.829e-12
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)7.631e-12
Glyma.14G192100 hypothetical protein AT5G58870:ftsh9:FTSH protease 9 1Chr14:45680613–45688731 (+)2.149e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.768e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)5.922e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.886e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.577e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.011e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.772e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)3.565e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.507e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.033e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.473e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.445e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)6.716e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.14e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.14e-13
Glyma.18G025700 hypothetical protein AT3G11110:AT3G11110:RING/U-box superfamily protein 1Chr18:1911249–1912730 (+)3.213e-13
Glyma.19G006200 hypothetical protein NA 1Chr19:590763–595425 (+)3.74e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.992e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.954e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.954e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)2.922e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)2.528e-12
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)6.723e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.323e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.883e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)8.099e-12
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)2.664e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)6.601e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.371e-11