Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49257

Metabolite ID
P49257
Deionized mass
924.4415 Da
Average m/z
925.4451
Average RT
25.9732
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
116
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

116 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)2.045e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.556e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.165e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.233e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 2Chr04:50558708–50569783 (+)1.057e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr04:50576216–50582296 (-)1.057e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)1.164e-12
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 2Chr09:4583416–4589291 (-)1.642e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.834e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.834e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.069e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.704e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)7.511e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 2Chr19:860974–865476 (+)1.981e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.439e-11
Glyma.02G203100 hypothetical protein AT5G58000:AT5G58000:Reticulon family protein 1Chr02:38843090–38847217 (-)2.042e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)9.825e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.196e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.341e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)1.057e-12
Glyma.04G237700 hypothetical protein NA 1Chr04:50614236–50619957 (+)7.855e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.395e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)7.588e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.346e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.794e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.068e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.068e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.031e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.566e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.566e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.566e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.348e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.015e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.601e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.193e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.72e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.72e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.72e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.687e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.687e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.878e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.289e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.549e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.289e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.289e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.549e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)9.227e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.856e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.856e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.231e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)3.451e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)4.999e-11
Glyma.09G052100 hypothetical protein AT3G22230:AT3G22230:Ribosomal L27e protein family 1Chr09:4536612–4538089 (+)6.877e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.521e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.349e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)2.349e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.736e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.039e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.092e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.371e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.595e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.683e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.151e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)3.461e-12
Glyma.09G249800 hypothetical protein AT3G47390:PHS1:cytidine/deoxycytidylate deaminase family protein 1Chr09:47082637–47087385 (-)2.736e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.736e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.546e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.468e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.468e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)4.69e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.468e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.468e-13
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)5.521e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)5.521e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)5.521e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.161e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.074e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)3.924e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)3.379e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.274e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.274e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.369e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.369e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.966e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.966e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.024e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.788e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.556e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.834e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.834e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.168e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.047e-11
Glyma.14G044100 hypothetical protein AT5G62300:AT5G62300:Ribosomal protein S10p/S20e family protein 1Chr14:3347545–3348907 (+)3.22e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.677e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.253e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.069e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.713e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.133e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.713e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.713e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.32e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.867e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.682e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.166e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.166e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.809e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.126e-11
Glyma.17G095900 hypothetical protein NA 1Chr17:7512456–7513872 (-)6.05e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)1.01e-11
Glyma.18G079100 hypothetical protein NA 1Chr18:7600652–7603424 (-)6.565e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.545e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.372e-11
Glyma.19G009900 hypothetical protein NA 1Chr19:923053–937826 (-)2.544e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.688e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.688e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)6.102e-11