Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48941

Metabolite ID
P48941
Deionized mass
183.0837 Da
Average m/z
184.0912
Average RT
25.7217
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.834e-12
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)6.084e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.164e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.521e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.007e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)7.462e-12
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)8.638e-11
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 2Chr06:14104416–14111842 (+)5.617e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.03e-14
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.959e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.959e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.959e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.009e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.51e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.121e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)2.36e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.107e-12
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)9.833e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)6.084e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)4.078e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)4.078e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.928e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)6.578e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.085e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.767e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)7.471e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.427e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.427e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.564e-11
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)1.99e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)3.411e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.577e-15
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.116e-12
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)8.638e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.457e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.473e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.988e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.377e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.941e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.424e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.424e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.424e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)4.795e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.429e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.429e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.792e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.888e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.9e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.816e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.815e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.356e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)6.857e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)6.857e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.869e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.361e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)8.362e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.171e-11
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)1.58e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.016e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.166e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.113e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.851e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)1.709e-12
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)1.709e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.709e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.825e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.614e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.959e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.959e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.959e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.959e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.959e-11
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)2.733e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)2.733e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)9.971e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)1.036e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)8.8e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.197e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.225e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.225e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.225e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.753e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.753e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.942e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.942e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.597e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.164e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.334e-13
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)4.447e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.855e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)4.947e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)5.749e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.443e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.369e-14
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.631e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.631e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.232e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.003e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.369e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.01e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.561e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.885e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.037e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.04e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.708e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.501e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.611e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.188e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)8.156e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.007e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.077e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.113e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.113e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.095e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)5.644e-13
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)7.569e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.551e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.048e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.127e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.127e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)6.483e-12
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)6.483e-12
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)6.483e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.333e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.299e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)9.752e-11