Overview Annotation GWAS Evidence Associated genes

P48679

Metabolite ID
P48679
Deionized mass
429.2810 Da
Average m/z
430.2880
Average RT
25.5086
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
9
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

9 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G060000 hypothetical protein NA 5Chr09:5548206–5554279 (-)4.187e-11
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 2Chr09:5561072–5570789 (+)4.187e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.522e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)4.187e-11
Glyma.09G059900 hypothetical protein AT4G26000:PEP:RNA-binding KH domain-containing protein 1Chr09:5540197–5546848 (+)4.187e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.187e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.883e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.924e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.089e-11