Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48657

Metabolite ID
P48657
Deionized mass
238.2269 Da
Average m/z
239.2334
Average RT
25.4966
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.943e-14
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.704e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.721e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.778e-11
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)4.304e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.105e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)6.61e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.446e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)7.339e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)6.687e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)4.651e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.31e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)4.089e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.461e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.299e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.101e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.673e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.023e-12
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)9.715e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.757e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)1.725e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.702e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.363e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.639e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.639e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.853e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.301e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.301e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.301e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)4.485e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.165e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.278e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.364e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.028e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.848e-18
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.013e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.013e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.123e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)7.872e-13
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)7.872e-13
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)4.211e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.721e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.721e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.721e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.721e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.948e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.286e-15
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.725e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.128e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.66e-15
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.418e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.418e-11
Glyma.10G229000 hypothetical protein NA 1Chr10:45906187–45911386 (+)7.445e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.524e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.223e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.922e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.922e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.5e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.5e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.5e-12
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)2.25e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.683e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.778e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)5.477e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.237e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.237e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.237e-13
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)4.304e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.669e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.169e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.365e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.254e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.213e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.437e-13
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)5.266e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.943e-14
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.943e-14
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.943e-14
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.943e-14
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)8.53e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.182e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.55e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.924e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.979e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.293e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)1.17e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)1.17e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.49e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.49e-12
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)2.936e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)2.936e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)2.936e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)9.33e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.071e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)6.239e-11
Glyma.18G274000 hypothetical protein AT5G38895:AT5G38895:RING/U-box superfamily protein 1Chr18:55663429–55669796 (-)4.446e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)8.236e-15
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.907e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.881e-13
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.422e-11