Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48575

Metabolite ID
P48575
Deionized mass
266.1500 Da
Average m/z
267.1593
Average RT
25.4243
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
91
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

91 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.257e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)9.353e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.081e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)1.84e-11
Glyma.06G207100 hypothetical protein AT1G73990:SPPA:signal peptide peptidase 2Chr06:19963095–19969940 (-)2.73e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.762e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)2.775e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)6.56e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.247e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.247e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.087e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.511e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)3.753e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.131e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.012e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.634e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.712e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.2e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.471e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.434e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.434e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.705e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.245e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.245e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.245e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.884e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.325e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.244e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.264e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)3.655e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)1.84e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)1.154e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)1.154e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)1.154e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)1.154e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)1.154e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)1.154e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)1.154e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)1.154e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)1.154e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)1.154e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)2.873e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)2.873e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)2.873e-11
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)3.935e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.257e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.257e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.592e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)9.19e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.89e-14
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.497e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.799e-13
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)2.597e-13
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)5.416e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.434e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.929e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.081e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)9.058e-11
Glyma.10G038200 hypothetical protein NA 1Chr10:3394443–3395342 (-)4.859e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.165e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.165e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.165e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.165e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.449e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.636e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.554e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.239e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.239e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.615e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.615e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.929e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.929e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.247e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.247e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.175e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.078e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.693e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.454e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.679e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)9.872e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)9.329e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.864e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.026e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)6.767e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)9.998e-12
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)9.31e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)7.545e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)7.389e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.859e-15
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.116e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.116e-12