Overview Annotation GWAS Evidence Associated genes

P48426

Metabolite ID
P48426
Deionized mass
399.2929 Da
Average m/z
400.3001
Average RT
25.3105
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
135
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

135 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 7Chr16:36856833–36863994 (-)2.942e-18
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 5Chr16:30652378–30659548 (+)3.522e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.819e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.978e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)6.07e-14
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 3Chr16:36871978–36878151 (-)3.086e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.426e-13
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)7.414e-18
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 2Chr09:6509441–6524102 (+)2.697e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.874e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.874e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.874e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.849e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)7.66e-14
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)6.336e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)7.297e-17
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.043e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.767e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.598e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.891e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.891e-15
Glyma.16G018000 hypothetical protein NA 2Chr16:1601748–1607341 (-)3.636e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)8.089e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.819e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)8.717e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.897e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.897e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)4.386e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)4.386e-11
Glyma.01G222700 hypothetical protein AT1G64060:RBOH F:respiratory burst oxidase protein F 1Chr01:55163018–55172994 (+)6.018e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)4.031e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)4.178e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.158e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.727e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.964e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.137e-14
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)8.193e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.965e-15
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)5.327e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.91e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.87e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.393e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.393e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.61e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.763e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.763e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.763e-15
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.527e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.237e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.152e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.295e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.817e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.817e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.817e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.806e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.286e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.286e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.768e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.768e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.733e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.438e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.979e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.979e-13
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)9.164e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.656e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)7.836e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.15e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)9.985e-11
Glyma.09G067600 hypothetical protein NA 1Chr09:6804057–6804365 (+)1.235e-12
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)1.535e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.1e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.606e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.622e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.899e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.063e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.874e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.874e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.874e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.874e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.874e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.522e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)2.425e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.161e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.667e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.667e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.667e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.427e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.427e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.189e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.297e-17
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.706e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.598e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.989e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.89e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.891e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.101e-15
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.432e-15
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.049e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.129e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.325e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.717e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)6.507e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.332e-15
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.408e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.191e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)5.626e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.936e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.796e-12
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)8.775e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.465e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.375e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.3e-16
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)3.173e-12
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)5.955e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.118e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.638e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.869e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.869e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)7.924e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.219e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.211e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.219e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)7.219e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)6.693e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.804e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.632e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.106e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.959e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.854e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.854e-14
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.089e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.102e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.993e-13
Glyma.20G177500 hypothetical protein AT5G63220:AT5G63220:golgi-to-ER traffic-like protein 1Chr20:41470287–41483978 (+)5.63e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)1.243e-11