Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48414

Metabolite ID
P48414
Deionized mass
660.3440 Da
Average m/z
661.3558
Average RT
25.2954
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.336e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.959e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.115e-15
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)3.664e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)6.797e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.336e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.004e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.004e-14
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)9.696e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)4.65e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.465e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.815e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.815e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.815e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.664e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.822e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.666e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.667e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.559e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.959e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.959e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.827e-16
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.899e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)4.426e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.457e-15
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.333e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)9.678e-14
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)6.792e-12
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)6.792e-12
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)6.792e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.301e-18
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.508e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.799e-16
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.737e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)2.279e-11
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)1.489e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)2.903e-14
Glyma.11G155200 hypothetical protein NA 1Chr11:12699697–12702736 (-)8.212e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)4.521e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.648e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.773e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.318e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.37e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.653e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.314e-12
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)6.188e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)2.706e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)2.373e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.812e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)7.286e-11