Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48276

Metabolite ID
P48276
Deionized mass
178.1349 Da
Average m/z
179.1413
Average RT
25.1475
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)2.735e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 4Chr13:31727841–31735910 (-)1.17e-15
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.006e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)1.17e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.537e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.537e-11
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)6.788e-13
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)6.788e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.427e-11
Glyma.02G135400 hypothetical protein NA 1Chr02:14005232–14008459 (-)7.601e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)5.057e-15
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.298e-12
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)2.735e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)2.735e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)2.735e-11
Glyma.04G097900 hypothetical protein AT5G65380:AT5G65380:MATE efflux family protein 1Chr04:8857667–8865249 (+)6.848e-11
Glyma.04G098100 hypothetical protein AT2G34990:AT2G34990:RING/U-box superfamily protein__AT1G72200:AT1G72200:RING/U-box superfamily protein 1Chr04:8887523–8888545 (-)3.477e-11
Glyma.04G098300 hypothetical protein NA 1Chr04:8910522–8912389 (-)3.477e-11
Glyma.04G098400 hypothetical protein AT1G22490:AT1G22490:basic helix-loop-helix (bHLH) DNA-binding superfamily protein__AT1G72210:AT1G72210:basic helix-loop… 1Chr04:8914410–8916406 (+)5.3e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.344e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.833e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.582e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.81e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.258e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.258e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.896e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.906e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.426e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.569e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.748e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.509e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.464e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)8.504e-12
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)1.163e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)4.141e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)4.141e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.441e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.47e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.369e-15
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)6.336e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)5.973e-13
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.024e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.65e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.258e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.951e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)9.624e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)6.822e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)7.764e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.17e-15
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.43e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.605e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.598e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.598e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.598e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.646e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.068e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)8.381e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)8.441e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.256e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)4.458e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.392e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)6.156e-12