Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48236

Metabolite ID
P48236
Deionized mass
385.2787 Da
Average m/z
386.2871
Average RT
25.1248
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
125
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

125 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.31e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)4.511e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.784e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.441e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.83e-14
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.028e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.139e-16
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.676e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.676e-15
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.118e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.188e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)4.511e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.103e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)4.5e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.525e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.058e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.596e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.282e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.577e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.577e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.577e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.577e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.577e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.577e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.577e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.441e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)4.753e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.171e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.171e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.108e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.339e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.318e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.21e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.162e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.867e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.271e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.86e-14
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.128e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.107e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.392e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.329e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.809e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.759e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.248e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.248e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.608e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.074e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.074e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.074e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.173e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.361e-14
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.187e-13
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)3.986e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.784e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.784e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.66e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.6e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.601e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.11e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.45e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.866e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)5.982e-12
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.28e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.209e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.63e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.454e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.744e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.65e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.682e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.936e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)6.441e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.777e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.777e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.777e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.777e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.154e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.1e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.058e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.08e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.207e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.207e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.207e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.207e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.052e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.051e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.406e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.406e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.139e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.894e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.676e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.676e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.558e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.211e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.146e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.43e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.441e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.437e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.879e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.437e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.437e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.769e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.529e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)5.042e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)5.042e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)6.751e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.56e-12
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)6.924e-12
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)5.534e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.226e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.846e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.846e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.545e-12
Glyma.16G207800 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36750028–36751833 (-)7.281e-13
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.193e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)2.137e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)2.473e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)2.816e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.916e-11
Glyma.18G287400 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component 1Chr18:56740754–56748259 (-)1.133e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.956e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.956e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.775e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.281e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.337e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)5.347e-11