Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48055

Metabolite ID
P48055
Deionized mass
748.5600 Da
Average m/z
749.5665
Average RT
25.0663
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
143
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

143 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G137600 hypothetical protein NA 4Chr16:29468438–29472890 (-)6.455e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.29e-17
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.303e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.814e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.056e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.346e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.859e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)6.725e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)3.51e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.902e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 2Chr10:2485817–2497071 (-)1.444e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.915e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.915e-14
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)6.479e-12
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)1.387e-11
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)4.278e-15
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.986e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.125e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.742e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.29e-17
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.364e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)7.911e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.054e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.054e-13
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)8.433e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.743e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.093e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)9.043e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.359e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.111e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.333e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.333e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.602e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.916e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.916e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.916e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.219e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.51e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.115e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.835e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.835e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.835e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)7.16e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)7.16e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.104e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.104e-15
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.617e-13
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)7.436e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)7.436e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.303e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.303e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.262e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.882e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.882e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.811e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.589e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.208e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)6.231e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.227e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)8.037e-15
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.902e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.902e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.902e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.902e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)3.004e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)3.004e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)6.864e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)3.16e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.01e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.01e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.444e-14
Glyma.10G028600 hypothetical protein NA 1Chr10:2487313–2489838 (+)6.11e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.773e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.773e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.773e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.813e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.813e-12
Glyma.13G044300 hypothetical protein NA 1Chr13:13774555–13779250 (-)4.598e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.004e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.004e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.915e-14
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.25e-12
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)7.281e-14
Glyma.14G063600 hypothetical protein AT5G05840:AT5G05840:replication factor C subunit, putative (DUF620) 1Chr14:5163603–5167769 (+)5.294e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.015e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)8.888e-13
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)8.888e-13
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)4.831e-13
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)4.416e-13
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)3.746e-12
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)1.139e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.567e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.936e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.617e-13
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.974e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.38e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.38e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.765e-13
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)9.725e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.78e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.479e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.056e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.056e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.056e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.056e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.518e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.408e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.156e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.859e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.859e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.988e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.545e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.603e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.846e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.649e-12
Glyma.16G137800 hypothetical protein NA 1Chr16:29480352–29487400 (-)1.276e-12
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)1.737e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.584e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.623e-16
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.551e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)2.124e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.624e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.624e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.986e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)7.912e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.886e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.644e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.506e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.506e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)8.212e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)9.407e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.125e-13
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)8.306e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.038e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)1.056e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.554e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.554e-14
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)8.651e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.452e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.011e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.949e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.01e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)5.35e-11