Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48037

Metabolite ID
P48037
Deionized mass
410.3091 Da
Average m/z
411.3191
Average RT
25.0540
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 2Chr13:31727841–31735910 (-)5.724e-12
Glyma.14G208500 hypothetical protein NA 2Chr14:47412802–47421148 (-)4.574e-12
Glyma.14G208900 hypothetical protein AT1G17200:AT1G17200:Uncharacterized protein family (UPF0497) 2Chr14:47451105–47454596 (-)2.221e-12
Glyma.14G209000 hypothetical protein NA 2Chr14:47461788–47463395 (+)2.221e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.143e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.222e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.918e-16
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.918e-16
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.52e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.65e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.794e-14
Glyma.03G108400 hypothetical protein NA 1Chr03:30897839–30899556 (+)2.956e-11
Glyma.03G109100 hypothetical protein NA 1Chr03:31002094–31010324 (-)2.504e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.794e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.475e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.475e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.062e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.38e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.38e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.38e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.859e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.791e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)5.925e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)5.925e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.785e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)9.883e-13
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)4.732e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.087e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.182e-11
Glyma.08G127000 hypothetical protein NA 1Chr08:9781692–9785219 (+)2.013e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.845e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.845e-12
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)5.488e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.216e-12
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)2.777e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.328e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.862e-13
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)9.171e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.21e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.21e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.21e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.21e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.734e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.734e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.223e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)6.284e-13
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.33e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.135e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)5.724e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)3.227e-11
Glyma.14G208400 hypothetical protein AT5G16360:AT5G16360:NC domain-containing protein-like protein 1Chr14:47403978–47407155 (-)5.948e-11
Glyma.14G208600 hypothetical protein NA 1Chr14:47437358–47439597 (-)2.221e-12
Glyma.14G208700 hypothetical protein NA 1Chr14:47442866–47447625 (-)2.221e-12
Glyma.14G209100 hypothetical protein NA 1Chr14:47464224–47465243 (+)1.882e-11
Glyma.14G209200 hypothetical protein NA 1Chr14:47466917–47468975 (+)2.221e-12
Glyma.14G209600 hypothetical protein NA 1Chr14:47485565–47488948 (-)2.221e-12
Glyma.14G209800 hypothetical protein AT5G17240:SDG40:SET domain group 40 1Chr14:47508042–47511868 (+)1.882e-11
Glyma.14G209900 hypothetical protein NA 1Chr14:47515899–47521687 (+)1.882e-11
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)8.181e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)2.953e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.723e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.334e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)8.097e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)8.12e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)9.266e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.497e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.027e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.027e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.725e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.902e-12