Overview Annotation GWAS Evidence Associated genes

P48016

Metabolite ID
P48016
Deionized mass
336.0966 Da
Average m/z
337.1050
Average RT
25.0406
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
155
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

155 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 4Chr13:31727841–31735910 (-)6.501e-16
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.146e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.805e-21
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)2.71e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.172e-15
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 2Chr01:51219681–51224948 (+)4.471e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.591e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.852e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.193e-13
Glyma.13G198600 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr13:31233913–31240731 (-)6.617e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)6.501e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.257e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.681e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.46e-11
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)3.704e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.94e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.146e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.538e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)9.459e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)9.351e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.918e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.613e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.092e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)1.082e-12
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)1.082e-12
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.88e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.884e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)7.65e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.104e-14
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.791e-16
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)1.713e-11
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)9.821e-11
Glyma.03G027900 hypothetical protein AT2G45270:GCP1:glycoprotease 1 1Chr03:3048805–3061575 (-)3.636e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)8.978e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.227e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.931e-16
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)2.616e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.126e-14
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.182e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.613e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.961e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.639e-16
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.403e-17
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.403e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.067e-18
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.036e-17
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.036e-17
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.036e-17
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.701e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.589e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.499e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.285e-11
Glyma.05G229700 hypothetical protein NA 1Chr05:40773431–40776814 (+)8.486e-12
Glyma.05G230700 hypothetical protein NA 1Chr05:40846362–40851592 (-)9.234e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.657e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)4.502e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.991e-13
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.991e-13
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.991e-13
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.991e-13
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)4.479e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.5e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.134e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.887e-17
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.181e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.181e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)2.681e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)8.048e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)8.048e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)8.048e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.129e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.745e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.852e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.852e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.852e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.852e-12
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)3.342e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)6.192e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.138e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)2.71e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)2.71e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.177e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.266e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.31e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.484e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.118e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.808e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.018e-15
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)6.102e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.289e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)5.308e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.556e-11
Glyma.10G055100 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr10:5015329–5032990 (+)2.308e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.187e-17
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.184e-17
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.631e-19
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.631e-19
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.631e-19
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.631e-19
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.558e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.558e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.287e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.287e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.888e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.082e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.082e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.541e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.541e-11
Glyma.13G067800 hypothetical protein AT5G15020:SNL2:SIN3-like 2 1Chr13:16765722–16775985 (+)8.811e-11
Glyma.13G067900 hypothetical protein NA 1Chr13:16787469–16789119 (+)3.141e-13
Glyma.13G068200 hypothetical protein AT5G14940:AT5G14940:Major facilitator superfamily protein 1Chr13:16825383–16836935 (+)3.437e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.016e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.172e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.103e-14
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)4.803e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)7.075e-11
Glyma.13G198800 hypothetical protein NA 1Chr13:31252110–31257733 (-)6.617e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)1.381e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.501e-16
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.735e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.148e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.148e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.341e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.681e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)5.441e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.782e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.396e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.782e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.782e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.074e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.36e-17
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)7.818e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.699e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.632e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.865e-11
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33322352–33330062 (+)5.029e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.488e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.893e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.258e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.258e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)3.994e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)3.994e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)3.994e-11
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)3.704e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)3.704e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)3.704e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)3.704e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.45e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.059e-18
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)5.317e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)9.201e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.759e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.302e-12
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)2.841e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)1.079e-11