Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47972

Metabolite ID
P47972
Deionized mass
451.2794 Da
Average m/z
452.2860
Average RT
25.0089
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.277e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.877e-11
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)5.303e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.109e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)2.457e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.045e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.377e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)5.827e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.877e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.429e-16
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)5.303e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.745e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.247e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.705e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.688e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.979e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.355e-13
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)7.028e-12
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)2.195e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.285e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)5.834e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.251e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.009e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.668e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.668e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.204e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.513e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.513e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.513e-15
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.211e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.911e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.633e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.693e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.306e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.613e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.613e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)7.804e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)7.863e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.369e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.637e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.845e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.289e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.17e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.17e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.17e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.17e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.941e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)6.966e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.781e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.781e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.134e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.566e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.565e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.565e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.813e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.652e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.978e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.178e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)8.508e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.067e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.57e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.68e-12
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)7.434e-12
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)3.187e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.17e-11
Glyma.18G140900 hypothetical protein AT4G33350:Tic22-IV:Tic22-like family protein 1Chr18:21505256–21507050 (-)9.795e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.598e-12
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)5.64e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.694e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.145e-13
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.973e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)8.075e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)5.228e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.896e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.181e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.181e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.66e-13
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.913e-12