Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47805

Metabolite ID
P47805
Deionized mass
661.2071 Da
Average m/z
662.2127
Average RT
24.9256
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)3.884e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.144e-11
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)1.164e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.457e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)8.062e-12
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)1.102e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.66e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.447e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.52e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.616e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.024e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.671e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)8.209e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.144e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.388e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)4.072e-13
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)8.405e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.412e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.317e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.374e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.92e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.215e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.579e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.195e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.276e-12
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)4.431e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)6.283e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.858e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.427e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.76e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.57e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.984e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.9e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.432e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.71e-15
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.873e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.046e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.046e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)3.281e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.105e-12
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.144e-11
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)1.807e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.258e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.66e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.66e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.66e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.66e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)8.768e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.236e-15
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.236e-15
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.058e-19
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)1.164e-15
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)1.164e-15
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.058e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.686e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.567e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.567e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.073e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.175e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.175e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.175e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.175e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.986e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.441e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.648e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.301e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.504e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.034e-11
Glyma.14G097400 hypothetical protein AT5G11960:AT5G11960:magnesium transporter, putative (DUF803) 1Chr14:9185419–9190929 (-)4.213e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.52e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.616e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.273e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.504e-11
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)5.136e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)6.779e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.879e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.457e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.457e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.457e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.457e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.135e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)6.459e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)6.459e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.085e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.56e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.463e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.464e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)8.062e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.34e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.34e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.946e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.946e-12
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)3.216e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)3.216e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)3.216e-11
Glyma.18G004900 hypothetical protein NA 1Chr18:384332–386910 (+)3.636e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)3.216e-12
Glyma.18G009100 hypothetical protein AT1G67620:AT1G67620:Lojap-related protein 1Chr18:662847–665921 (+)3.119e-11
Glyma.18G009200 hypothetical protein NA 1Chr18:667359–671598 (+)3.119e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)3.407e-12
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)3.407e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.063e-12
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)5.637e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.227e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)1.062e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.165e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.165e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.997e-11
Glyma.20G026700 hypothetical protein NA 1Chr20:2935653–2945665 (-)7.153e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)9.091e-11
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 1Chr20:34796301–34808587 (+)1.032e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)6.933e-13
Glyma.20G105600 hypothetical protein AT2G17033:AT2G17033:pentatricopeptide (PPR) repeat-containing protein 1Chr20:34818550–34820435 (-)1.032e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.096e-15
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)2.877e-14
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)1.012e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.082e-15
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.022e-13
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)5.188e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)9.236e-15
Glyma.20G109700 hypothetical protein NA 1Chr20:35206615–35208030 (+)1.825e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.815e-17
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.159e-14
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)4.145e-11