Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47562

Metabolite ID
P47562
Deionized mass
530.7816 Da
Average m/z
531.7887
Average RT
24.8281
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
89
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

89 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.156e-11
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)4.687e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)9.792e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.446e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.511e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)1.257e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.503e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.214e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.502e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.093e-14
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)7.315e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.156e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.226e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.09e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.276e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.565e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.565e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.065e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.312e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.312e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.312e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)4.887e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.198e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.643e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.968e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.069e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.068e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.069e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)7.931e-12
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)9.598e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)8.615e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.511e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.511e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.511e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.511e-11
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)6.172e-12
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)1.713e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)2.349e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)6.968e-12
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)1.065e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.166e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)2.997e-11
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)7.875e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)7.875e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.695e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.695e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.695e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.695e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.101e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)4.691e-11
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)3.116e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.836e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.836e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.291e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.291e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.319e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.559e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.241e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.241e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.578e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.596e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.99e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.214e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.162e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.162e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.162e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.871e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)8.829e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.171e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.428e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.171e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.171e-14
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)4.687e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)4.687e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.502e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.01e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.151e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.791e-12
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)1.007e-12
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)1.007e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)9.545e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.505e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.506e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.093e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.395e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)7.113e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)5.302e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.919e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.252e-11