Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47554

Metabolite ID
P47554
Deionized mass
452.2804 Da
Average m/z
453.2871
Average RT
24.8234
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
87
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

87 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)3.115e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)8.612e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.257e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.257e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.257e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.132e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.128e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.262e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.262e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.446e-12
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)6.336e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.587e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.542e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)2.297e-16
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)2.297e-16
Glyma.20G004900 Probable xyloglucan galactosyltransferase GT17 AT1G68470:AT1G68470:Exostosin family protein 2Chr20:474697–477611 (+)1.025e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)1.981e-11
Glyma.01G230400 hypothetical protein AT2G40935:AT2G40935:PLAC8 family protein 1Chr01:55782953–55786502 (+)4.965e-11
Glyma.01G230800 hypothetical protein AT4G10050:AT4G10050:esterase/lipase/thioesterase family protein 1Chr01:55803995–55808033 (+)1.905e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)2.495e-11
Glyma.01G231900 hypothetical protein AT1G71500:AT1G71500:Rieske (2Fe-2S) domain-containing protein 1Chr01:55869836–55872417 (+)4.212e-12
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)4.876e-15
Glyma.01G234300 hypothetical protein AT5G16680:AT5G16680:RING/FYVE/PHD zinc finger superfamily protein 1Chr01:56040889–56049889 (-)6.151e-13
Glyma.01G235200 hypothetical protein AT1G05460:SDE3:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr01:56103784–56110667 (-)9.908e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)2.04e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)5.723e-13
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)7.03e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.067e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.05e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.513e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.356e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.119e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.119e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.119e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.907e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)4.779e-14
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)4.779e-14
Glyma.06G132300 hypothetical protein AT5G24350:AT5G24350:neuroblastoma-amplified sequence protein 1Chr06:10895966–10910088 (+)5.272e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)2.006e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.627e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.994e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.121e-11
Glyma.08G031900 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr08:2547941–2553643 (+)8.018e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.545e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.545e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.251e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.805e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.241e-13
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)3.442e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.7e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.417e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.257e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.257e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.257e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.257e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.257e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.986e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.286e-11
Glyma.11G026700 hypothetical protein AT1G63020:NRPD1A:nuclear RNA polymerase D1A 1Chr11:1908384–1922893 (+)9.375e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.513e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.525e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.525e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.521e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)8.888e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.307e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.307e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.262e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.721e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.329e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.505e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.116e-11
Glyma.16G147900 hypothetical protein NA 1Chr16:30864919–30872425 (+)7.41e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.99e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)8.612e-11
Glyma.17G244200 hypothetical protein AT2G26560:PLA2A:phospholipase A 2A 1Chr17:39960277–39964490 (-)5.825e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)3.25e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)2.617e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)2.617e-11
Glyma.18G099500 hypothetical protein AT1G62190:AT1G62190:Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein__AT2G22890:AT2G22890… 1Chr18:10451349–10452922 (+)3.925e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)6.336e-14
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.126e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)6.336e-14
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)3.656e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)4.022e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.587e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.542e-11
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)1.871e-11