Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47299

Metabolite ID
P47299
Deionized mass
918.5724 Da
Average m/z
919.5759
Average RT
24.6494
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.08e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.092e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)5.208e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)8.203e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.172e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.408e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.409e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.409e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.329e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.655e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.535e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)5.177e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.714e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.615e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)8.362e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.101e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.266e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.266e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.266e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.309e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.029e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.723e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.723e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.038e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.201e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.201e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.201e-15
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.45e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.048e-14
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)2.679e-12
Glyma.05G221800 hypothetical protein NA 1Chr05:40120284–40122468 (-)4.365e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.21e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.995e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.362e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.246e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.842e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.636e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.092e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.092e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.197e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.305e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.173e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.172e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.173e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.173e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.376e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.758e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.744e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.409e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.409e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.409e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.409e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.409e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)8.645e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.125e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.125e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.125e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.125e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.529e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.529e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.529e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.529e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)3.62e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.451e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)9.86e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.581e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.406e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.813e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.154e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.947e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.947e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.77e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.466e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.228e-11