Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47087

Metabolite ID
P47087
Deionized mass
268.1979 Da
Average m/z
269.2062
Average RT
24.5110
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)4.148e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.073e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.273e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 3Chr16:36871978–36878151 (-)2.926e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.015e-11
Glyma.07G018100 hypothetical protein NA 2Chr07:1442368–1445430 (-)2.348e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.935e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.609e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)6.916e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.909e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.461e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.461e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.117e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.934e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.411e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)8.932e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.388e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.074e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.794e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)7.227e-11
Glyma.01G222700 hypothetical protein AT1G64060:RBOH F:respiratory burst oxidase protein F 1Chr01:55163018–55172994 (+)5.843e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.67e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.818e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.439e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.735e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.347e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)5.699e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.826e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.626e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)6.949e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.424e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.424e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.424e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.822e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.435e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.435e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.273e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.273e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)6.412e-12
Glyma.07G010700 hypothetical protein AT3G13730:CYP90D1:cytochrome P450, family 90, subfamily D, polypeptide 1 1Chr07:817488–822276 (+)6.412e-12
Glyma.07G011500 hypothetical protein NA 1Chr07:879557–882132 (+)5.407e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.522e-12
Glyma.07G016700 hypothetical protein NA 1Chr07:1343519–1350422 (-)4.837e-11
Glyma.07G017300 hypothetical protein NA 1Chr07:1397047–1398526 (-)4.837e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.837e-11
Glyma.07G018200 hypothetical protein AT1G05385:LPA19:photosystem II 11 kDa protein-like protein 1Chr07:1455309–1457197 (-)4.837e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.348e-15
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)7.314e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.935e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.935e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.935e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.935e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.214e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.901e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.605e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)6.569e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)6.569e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)9.799e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.245e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.033e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.033e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.309e-12
Glyma.10G186500 PT7 NA 1Chr10:41946209–41950274 (-)5.137e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.453e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.188e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)7.394e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.628e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.628e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.628e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.414e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.414e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.916e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.665e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.104e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.104e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.242e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.722e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.722e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.461e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.225e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)4.938e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)7.137e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)7.137e-11
Glyma.14G198800 hypothetical protein AT1G07030:AT1G07030:Mitochondrial substrate carrier family protein 1Chr14:46375963–46379746 (-)8.297e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.934e-15
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.09e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.984e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.422e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.984e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.984e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.23e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.64e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)3.383e-16
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.606e-18
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)9.128e-14
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.162e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.868e-16
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.868e-16
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.748e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.189e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.896e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.686e-14
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)9.239e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.99e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)4.887e-16
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.015e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.521e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.521e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.014e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.014e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.152e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)8.932e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.749e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.748e-15
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)9.497e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.165e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.378e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.142e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.592e-11
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)8.232e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)3.076e-14