Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46936

Metabolite ID
P46936
Deionized mass
876.4780 Da
Average m/z
877.4907
Average RT
24.4234
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
105
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

105 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)4.897e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.226e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.212e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.005e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)8.018e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.3e-11
Glyma.08G149500 hypothetical protein NA 2Chr08:11460264–11465243 (-)2.214e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.81e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.414e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)9.758e-15
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)5.887e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.226e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.109e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.695e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.772e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.905e-12
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)8.598e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.527e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.407e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.512e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.512e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.216e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.113e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.113e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.113e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.26e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.493e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.65e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.131e-11
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)2.696e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.007e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.007e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.007e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.556e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.556e-14
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)2.31e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)2.31e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)2.31e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)2.31e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)2.31e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)2.31e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)2.31e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)2.31e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)2.31e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)2.31e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)6.545e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)6.545e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)6.545e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.027e-12
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)8.017e-11
Glyma.08G107700 RHG4 receptor-like kinase RHG4 NA 1Chr08:8284689–8288765 (+)6.214e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)5.787e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.023e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)9.439e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.005e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.005e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.179e-17
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.502e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.285e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.808e-12
Glyma.11G077300 hypothetical protein AT2G17890:CPK16:calcium-dependent protein kinase 16__AT5G66210:CPK28:calcium-dependent protein kinase 28__AT4G36070:CPK… 1Chr11:5795953–5801540 (+)1.167e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)1.926e-13
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)6.704e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.845e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.845e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.154e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.154e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.793e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.721e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.344e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.344e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)7.462e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.061e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.414e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.495e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.495e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.495e-12
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)3.605e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)6.584e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)9.688e-11
Glyma.16G014200 hypothetical protein AT5G12370:SEC10:exocyst complex component sec10 1Chr16:1243163–1253803 (-)1.196e-11
Glyma.16G015300 hypothetical protein NA 1Chr16:1335008–1337934 (+)7.034e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.897e-14
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.897e-14
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.897e-14
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.897e-14
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.309e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.774e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.005e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.005e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.286e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.948e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.332e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)2.757e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.194e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.11e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.11e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)2.665e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)1.055e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)4.734e-15
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)9.805e-16
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.361e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)2.535e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.245e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.297e-11