Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46873

Metabolite ID
P46873
Deionized mass
339.1301 Da
Average m/z
340.1389
Average RT
24.3714
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.202e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)6.364e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.311e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.609e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.609e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.609e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.998e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.195e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.623e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.249e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.249e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.695e-12
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)6.022e-11
Glyma.03G008300 hypothetical protein AT4G00400:GPAT8:glycerol-3-phosphate acyltransferase 8 1Chr03:801855–806650 (-)6.991e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.764e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)5.416e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.025e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.315e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.394e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.82e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.266e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.266e-14
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.265e-15
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.2e-14
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.265e-15
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.265e-15
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.2e-14
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)5.855e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)9.957e-13
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)9.034e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.148e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.609e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.609e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.609e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.89e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.609e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.609e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.322e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.48e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.48e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.48e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.48e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.515e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.839e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.747e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.28e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.28e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.28e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.334e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.334e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.159e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.623e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.326e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.326e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.249e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.311e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.695e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.199e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.943e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.058e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.943e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.943e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.435e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.636e-15
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.694e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.646e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.202e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)9.364e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.749e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.454e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)8.223e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.989e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.515e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.515e-11