Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46858

Metabolite ID
P46858
Deionized mass
331.1450 Da
Average m/z
332.1519
Average RT
24.3624
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.78e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.18e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.482e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.123e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)1.635e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)4.151e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)4.151e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)4.151e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)1.045e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.083e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.223e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.376e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.499e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.315e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.724e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.62e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.62e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.182e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.537e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.977e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.48e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.181e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.181e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.181e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.181e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.056e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.757e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.272e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.272e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.406e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.18e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.456e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.456e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.456e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.718e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.125e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.125e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.483e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.423e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.837e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.8e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.482e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.297e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.123e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.987e-11