P46641
Metabolite ID
P46641
Deionized mass
830.4901 Da
Average m/z
831.4964
Average RT
24.2419
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
112
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
112 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.01G045600 | hypothetical protein | NA | 3 | Chr01:5242432–5245038 (-) | 3.396e-12 | |
| Glyma.17G218600 | hypothetical protein | NA | 3 | Chr17:36975400–36982812 (-) | 1.1e-11 | |
| Glyma.01G126800 | hypothetical protein | NA | 2 | Chr01:43602195–43612710 (+) | 9.801e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 2 | Chr03:2423540–2428634 (-) | 2.164e-17 | |
| Glyma.03G120100 | hypothetical protein | AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 | 2 | Chr03:33174618–33180955 (+) | 1.038e-13 | |
| Glyma.03G135300 | hypothetical protein | NA | 2 | Chr03:35092248–35097578 (+) | 6.425e-11 | |
| Glyma.05G034000 | hypothetical protein | AT4G03400:DFL2:Auxin-responsive GH3 family protein | 2 | Chr05:2965889–2971412 (-) | 9.913e-15 | |
| Glyma.05G164700 | hypothetical protein | NA | 2 | Chr05:35543931–35549196 (-) | 3.754e-11 | |
| Glyma.09G058900 | hypothetical protein | NA | 2 | Chr09:5397968–5404650 (-) | 9.831e-13 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 2 | Chr12:36267599–36271584 (+) | 1.505e-19 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 2 | Chr12:36289704–36295084 (-) | 3.866e-14 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 2 | Chr13:24677399–24693129 (-) | 3.322e-11 | |
| Glyma.14G093100 | hypothetical protein | NA | 2 | Chr14:8654730–8655892 (-) | 1.126e-15 | |
| Glyma.14G201600 | hypothetical protein | NA | 2 | Chr14:46703283–46706500 (+) | 3.388e-13 | |
| Glyma.18G242900 | hypothetical protein | NA | 2 | Chr18:53113341–53119592 (-) | 2e-13 | |
| Glyma.01G045400 | hypothetical protein | NA | 1 | Chr01:5140834–5144197 (-) | 1.056e-11 | |
| Glyma.01G045700 | hypothetical protein | AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… | 1 | Chr01:5265956–5271379 (-) | 3.396e-12 | |
| Glyma.01G126900 | hypothetical protein | NA | 1 | Chr01:43632082–43635399 (+) | 9.801e-11 | |
| Glyma.01G175500 | hypothetical protein | AT3G50660:DWF4:Cytochrome P450 superfamily protein | 1 | Chr01:51219681–51224948 (+) | 3.468e-16 | |
| Glyma.01G234100 | hypothetical protein | AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr01:56022128–56026001 (+) | 1.516e-14 | |
| Glyma.01G234300 | hypothetical protein | AT5G16680:AT5G16680:RING/FYVE/PHD zinc finger superfamily protein | 1 | Chr01:56040889–56049889 (-) | 5.285e-13 | |
| Glyma.02G044600 | hypothetical protein | NA | 1 | Chr02:4131829–4134877 (+) | 3.742e-13 | |
| Glyma.02G086900 | hypothetical protein | AT3G24130:AT3G24130:Pectin lyase-like superfamily protein | 1 | Chr02:7553127–7557516 (-) | 5.02e-13 | |
| Glyma.02G294000 | hypothetical protein | NA | 1 | Chr02:47237993–47240495 (+) | 2.206e-11 | |
| Glyma.02G294500 | hypothetical protein | AT5G50850:MAB1:Transketolase family protein | 1 | Chr02:47272683–47277831 (-) | 1.064e-11 | |
| Glyma.02G295900 | hypothetical protein | NA | 1 | Chr02:47375932–47378006 (+) | 1.112e-12 | |
| Glyma.02G296200 | hypothetical protein | AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 | 1 | Chr02:47383044–47395946 (-) | 1.112e-12 | |
| Glyma.02G296300 | hypothetical protein | AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein | 1 | Chr02:47399263–47406220 (-) | 2.997e-11 | |
| Glyma.03G021600 | hypothetical protein | AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … | 1 | Chr03:2240686–2246512 (-) | 7.05e-11 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 1.634e-12 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 1.859e-12 | |
| Glyma.03G034200 | hypothetical protein | NA | 1 | Chr03:3989072–3993561 (+) | 3.316e-11 | |
| Glyma.03G036500 | WNK5 | AT3G51630:WNK5:with no lysine (K) kinase 5 | 1 | Chr03:4402746–4408323 (+) | 8.983e-11 | |
| Glyma.03G036800 | TBP1 | AT3G13445:TBP1:TATA binding protein 1 | 1 | Chr03:4472672–4477787 (-) | 1.743e-11 | |
| Glyma.03G040600 | hypothetical protein | AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 | 1 | Chr03:5113019–5121557 (+) | 2.675e-11 | |
| Glyma.03G119400 | hypothetical protein | AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 | 1 | Chr03:33050663–33053094 (+) | 5.948e-12 | |
| Glyma.03G135600 | hypothetical protein | NA | 1 | Chr03:35109981–35110632 (-) | 2.18e-12 | |
| Glyma.03G136000 | hypothetical protein | NA | 1 | Chr03:35138670–35188160 (-) | 2.771e-13 | |
| Glyma.03G136100 | hypothetical protein | NA | 1 | Chr03:35199503–35203392 (-) | 4.467e-11 | |
| Glyma.03G169700 | hypothetical protein | AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… | 1 | Chr03:38442950–38448706 (+) | 1.403e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 5.662e-12 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 6.198e-14 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 2.13e-13 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 2.13e-13 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 9.195e-17 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 3.181e-15 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 3.181e-15 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 3.181e-15 | |
| Glyma.05G137500 | hypothetical protein | NA | 1 | Chr05:33012282–33015297 (-) | 8.434e-12 | |
| Glyma.05G137600 | hypothetical protein | NA | 1 | Chr05:33018107–33020120 (-) | 2.907e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 4.478e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 5.69e-11 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 5.764e-12 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 1.409e-11 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 1.409e-11 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 1.409e-11 | |
| Glyma.06G118500 | hypothetical protein | NA | 1 | Chr06:9644661–9650144 (-) | 1.841e-15 | |
| Glyma.06G118800 | hypothetical protein | NA | 1 | Chr06:9666921–9667708 (+) | 1.841e-15 | |
| Glyma.06G121000 | hypothetical protein | NA | 1 | Chr06:9848464–9850191 (-) | 9.438e-14 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 3.351e-15 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 3.351e-15 | |
| Glyma.06G126500 | hypothetical protein | AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr06:10367536–10373426 (-) | 3.95e-11 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 4.449e-11 | |
| Glyma.06G190300 | hypothetical protein | AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) | 1 | Chr06:16709212–16710732 (-) | 1.64e-13 | |
| Glyma.06G260900 | hypothetical protein | NA | 1 | Chr06:44662225–44665728 (-) | 3.125e-13 | |
| Glyma.07G015700 | hypothetical protein | AT1G79750:NADP-ME4:NADP-malic enzyme 4 | 1 | Chr07:1244977–1251198 (-) | 1.201e-12 | |
| Glyma.07G034300 | hypothetical protein | NA | 1 | Chr07:2701469–2717662 (-) | 4.477e-12 | |
| Glyma.07G091400 | COL21 | CONSTANS-like zinc finger protein | AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein | 1 | Chr07:8539101–8547001 (+) | 8.865e-13 |
| Glyma.07G095400 | hypothetical protein | NA | 1 | Chr07:8914725–8920132 (+) | 4.996e-11 | |
| Glyma.08G188000 | hypothetical protein | AT1G22930:AT1G22930:T-complex protein 11 | 1 | Chr08:15072032–15079757 (-) | 2.472e-11 | |
| Glyma.09G056300 | hypothetical protein | NA | 1 | Chr09:5059486–5068979 (+) | 4.665e-12 | |
| Glyma.09G057400 | hypothetical protein | AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein | 1 | Chr09:5173554–5193820 (-) | 5.958e-11 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 8.302e-13 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 6.551e-13 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 1.768e-17 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 2.154e-16 | |
| Glyma.09G186700 | hypothetical protein | AT1G20050:HYD1:C-8,7 sterol isomerase | 1 | Chr09:41147591–41150204 (+) | 8.812e-11 | |
| Glyma.09G187700 | hypothetical protein | AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein | 1 | Chr09:41217358–41221592 (-) | 1.918e-12 | |
| Glyma.09G202900 | hypothetical protein | AT5G10560:AT5G10560:Glycosyl hydrolase family protein | 1 | Chr09:42685911–42690981 (-) | 1.728e-12 | |
| Glyma.09G282900 | hypothetical protein | AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 | 1 | Chr09:49863377–49871270 (+) | 1.225e-12 | |
| Glyma.10G263800 | hypothetical protein | AT1G23010:LPR1:Cupredoxin superfamily protein | 1 | Chr10:48805999–48811533 (-) | 6.152e-11 | |
| Glyma.10G265400 | hypothetical protein | AT2G01290:RPI2: | 1 | Chr10:48921268–48922795 (+) | 8.618e-12 | |
| Glyma.10G266400 | hypothetical protein | NA | 1 | Chr10:48984735–48993690 (+) | 1.346e-11 | |
| Glyma.11G049700 | hypothetical protein | NA | 1 | Chr11:3731308–3734534 (+) | 5.379e-11 | |
| Glyma.11G050300 | hypothetical protein | AT2G23093:AT2G23093:Major facilitator superfamily protein | 1 | Chr11:3765453–3771565 (+) | 1.402e-12 | |
| Glyma.11G050500 | hypothetical protein | AT5G67370:CGLD27:DUF1230 family protein (DUF1230) | 1 | Chr11:3778152–3782174 (+) | 1.402e-12 | |
| Glyma.11G050600 | hypothetical protein | NA | 1 | Chr11:3779988–3786583 (-) | 1.402e-12 | |
| Glyma.11G051600 | hypothetical protein | NA | 1 | Chr11:3857225–3859564 (-) | 1.402e-12 | |
| Glyma.11G119600 | hypothetical protein | AT2G16130:PMT2:polyol/monosaccharide transporter 2 | 1 | Chr11:9127497–9129972 (-) | 6.406e-12 | |
| Glyma.12G186200 | hypothetical protein | AT3G44350:NAC061:NAC domain containing protein 61 | 1 | Chr12:34708678–34710549 (+) | 2.123e-11 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 1.505e-19 | |
| Glyma.12G202500 | hypothetical protein | AT1G03600:PSB27:photosystem II family protein | 1 | Chr12:36301835–36304669 (+) | 6.059e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 3.322e-11 | |
| Glyma.13G161900 | PAP25 | purple acid phosphatase | AT5G34850:PAP26:purple acid phosphatase 26 | 1 | Chr13:27748190–27752685 (-) | 3.126e-13 |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 7.382e-11 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 1 | Chr13:31727841–31735910 (-) | 7.382e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 7.382e-11 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 9.568e-14 | |
| Glyma.14G190300 | hypothetical protein | AT2G04240:XERICO:RING/U-box superfamily protein | 1 | Chr14:45531920–45533895 (-) | 7.803e-12 | |
| Glyma.14G190400 | hypothetical protein | AT3G07650:COL9:CONSTANS-like 9 | 1 | Chr14:45536719–45544087 (-) | 7.803e-12 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 3.567e-13 | |
| Glyma.14G213400 | hypothetical protein | NA | 1 | Chr14:47844823–47847028 (+) | 8.121e-13 | |
| Glyma.15G035600 | hypothetical protein | AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III | 1 | Chr15:2830678–2835534 (+) | 1.454e-11 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 3.685e-13 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 3.172e-12 | |
| Glyma.17G218700 | hypothetical protein | NA | 1 | Chr17:36986191–36991558 (-) | 1.1e-11 | |
| Glyma.17G218800 | Peptidyl-prolyl cis-trans isomerase CYP57 | AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | 1 | Chr17:37027171–37033720 (-) | 9.925e-11 | |
| Glyma.18G238000 | hypothetical protein | AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein | 1 | Chr18:52679724–52682816 (+) | 1.611e-11 | |
| Glyma.18G251900 | hypothetical protein | AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… | 1 | Chr18:53855786–53862322 (-) | 4.873e-14 | |
| Glyma.18G268000 | hypothetical protein | NA | 1 | Chr18:55205656–55213313 (-) | 4.761e-13 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 2.466e-13 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 1 | Chr20:34984922–34988496 (+) | 7.058e-11 |