Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46599

Metabolite ID
P46599
Deionized mass
607.3360 Da
Average m/z
608.3440
Average RT
24.2085
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.113e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.325e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.676e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)4.85e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.036e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)1.375e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.113e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.677e-12
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 2Chr19:38346007–38347425 (-)3.442e-14
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.372e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)8.444e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.219e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.527e-13
Glyma.05G219800 TRE1 trehalase 1 AT4G24040:TRE1:trehalase 1 1Chr05:39920183–39925215 (+)1.02e-11
Glyma.05G220100 hypothetical protein AT1G33170:AT1G33170:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:39950499–39956022 (+)1.02e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.456e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.058e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.701e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.255e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.862e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.658e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.658e-13
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.806e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.655e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.655e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)9.221e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.176e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.85e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.911e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.036e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.036e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.036e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.036e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.076e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.222e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.274e-11
Glyma.11G077300 hypothetical protein AT2G17890:CPK16:calcium-dependent protein kinase 16__AT5G66210:CPK28:calcium-dependent protein kinase 28__AT4G36070:CPK… 1Chr11:5795953–5801540 (+)1.166e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.774e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.788e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)1.375e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.36e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.156e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.998e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.01e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.45e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.083e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.325e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.666e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.666e-11
Glyma.19G124600 hypothetical protein AT3G10740:ASD1:alpha-L-arabinofuranosidase 1 1Chr19:38280162–38286500 (+)5.652e-12
Glyma.19G124700 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 1Chr19:38288342–38293451 (+)5.652e-12
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)3.442e-14
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)3.442e-14
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)4.148e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)8.518e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.241e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.203e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.295e-13