Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46594

Metabolite ID
P46594
Deionized mass
627.3806 Da
Average m/z
628.3859
Average RT
24.2030
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.133e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.435e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.986e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.87e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)3.122e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)1.984e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.522e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.864e-14
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.118e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.133e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.994e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.128e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)9.013e-11
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)7.891e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.002e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.277e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.277e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.743e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.167e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.167e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.167e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.17e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)4.01e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.059e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.383e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.383e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.643e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.202e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)3.3e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.166e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.166e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.198e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.135e-15
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.522e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.522e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.522e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.522e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.287e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.354e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.354e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)7.481e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.269e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.435e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.435e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.435e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.435e-13
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.515e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.069e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.87e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.87e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.465e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.155e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.943e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.551e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)4.629e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)4.629e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)8.623e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)6.546e-12
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)5.556e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.351e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.911e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.911e-12