Overview Annotation GWAS Evidence Associated genes

P46482

Metabolite ID
P46482
Deionized mass
224.0945 Da
Average m/z
225.1011
Average RT
24.0684
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
154
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

154 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.048e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.509e-12
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)4.034e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.778e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.192e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.184e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.683e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.852e-11
Glyma.19G130800 hypothetical protein NA 3Chr19:39069648–39108791 (+)6.432e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.101e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.542e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.132e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.42e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.09e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.78e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.652e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.652e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.531e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)7.163e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)1.422e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.595e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.649e-19
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.649e-19
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.509e-12
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.48e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)4.843e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.104e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)7.85e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.862e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.331e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.65e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.868e-16
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.445e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.851e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.523e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.523e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.969e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.196e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.196e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.196e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.994e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.597e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.501e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.42e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.364e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)4.06e-15
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)1.318e-12
Glyma.06G091500 hypothetical protein NA 1Chr06:7175769–7178554 (-)5.173e-14
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)3.466e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.709e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.709e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.533e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.357e-13
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)1.113e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)1.113e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.904e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.784e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.904e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.904e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.784e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.269e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.738e-11
Glyma.06G296500 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr06:48551973–48557217 (-)5.223e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.898e-14
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.215e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.579e-12
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)3.623e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)9.097e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.071e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.071e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.136e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.016e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.863e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.997e-22
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.557e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.87e-14
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)5.229e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.267e-12
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)8.543e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)7.911e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)7.911e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)7.911e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.594e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.478e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)7.688e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.224e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.224e-15
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.825e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.189e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.189e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.418e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.896e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.896e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.574e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.78e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.055e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.055e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.652e-13
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)5.114e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)4.034e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.044e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.362e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.531e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.045e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.269e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.53e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.269e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.268e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.369e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.304e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.304e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)8.77e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.757e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.778e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.778e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.778e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.778e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.801e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.465e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.088e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.184e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.184e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.496e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.062e-15
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.885e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.254e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.131e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.428e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)2.516e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.852e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.007e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.007e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.988e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.988e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)2.252e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.918e-16
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)1.322e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.162e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.193e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.162e-13
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)6.724e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)9.349e-13
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.954e-16
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.224e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.595e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.16e-11
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)7.509e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.305e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.416e-15
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.016e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.047e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.42e-12
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 1Chr20:34184591–34191923 (+)4.991e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)8.087e-11