Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46457

Metabolite ID
P46457
Deionized mass
541.3120 Da
Average m/z
542.3187
Average RT
24.0469
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
77
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

77 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.751e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.195e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.855e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.595e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.596e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.596e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.751e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.774e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.61e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.754e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.64e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.215e-14
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.658e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.068e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.348e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.348e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.348e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.113e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.578e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.43e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.058e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.34e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.34e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.34e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.822e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.59e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.822e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.822e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.59e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.596e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.596e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)7.649e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.596e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.313e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.963e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)4.796e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.923e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.792e-16
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.792e-16
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.187e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.187e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.842e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.842e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.455e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.755e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.203e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.203e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)7.995e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.23e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.23e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.23e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.161e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.594e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.594e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.188e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.188e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.618e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.915e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.618e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.618e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.799e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.292e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.855e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.855e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.342e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.659e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.623e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.623e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)3.99e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.866e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.936e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.936e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)1.361e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.315e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.064e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.439e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.408e-15