Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46376

Metabolite ID
P46376
Deionized mass
358.2094 Da
Average m/z
359.2184
Average RT
23.9933
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.87e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.313e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)3.959e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.634e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.373e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.899e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)4.838e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.87e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.936e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.01e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.215e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.614e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.694e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.025e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.087e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.269e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.467e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.511e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.511e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.245e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.587e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.313e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.313e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.743e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.479e-14
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)6.06e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.09e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.674e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.826e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.938e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.44e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.44e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.44e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.44e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.265e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.234e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.079e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.872e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.261e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.275e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.275e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.174e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.177e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.175e-11
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)3.749e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.007e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.097e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.008e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.276e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.187e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.187e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.529e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.602e-11