Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46143

Metabolite ID
P46143
Deionized mass
472.3008 Da
Average m/z
473.3068
Average RT
23.7729
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.487e-11
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)1.383e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.206e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.102e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.102e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.102e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.634e-12
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)3.899e-11
Glyma.18G226200 hypothetical protein AT4G00750:AT4G00750:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr18:51454812–51459765 (-)1.296e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.487e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.282e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)9.952e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.625e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)7.732e-11
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)4.195e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.167e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.604e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.516e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.206e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.206e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.206e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.206e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.52e-15
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.52e-15
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.136e-18
Glyma.08G213200 hypothetical protein AT3G15890:AT3G15890:Protein kinase superfamily protein 1Chr08:17200661–17204670 (+)5.618e-12
Glyma.08G213600 hypothetical protein AT1G48900:AT1G48900:Signal recognition particle, SRP54 subunit protein__AT5G49500:AT5G49500:Signal recognition particle… 1Chr08:17239144–17242612 (-)5.618e-12
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)1.383e-13
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)1.383e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.474e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.102e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.102e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.102e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.102e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.102e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.461e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.468e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.468e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.468e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.468e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.401e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.666e-14
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)8.205e-11
Glyma.12G005000 hypothetical protein AT1G71692:AGL12:AGAMOUS-like 12 1Chr12:388994–395345 (-)3.565e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.323e-12
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)3.899e-11
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)1.66e-11
Glyma.16G024700 hypothetical protein NA 1Chr16:2403095–2406034 (+)2.515e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)2.515e-11
Glyma.16G024900 hypothetical protein AT3G61740:SDG14:SET domain protein 14 1Chr16:2412463–2420547 (+)2.515e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)6.028e-13
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)5.596e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.596e-11
Glyma.20G018900 hypothetical protein NA 1Chr20:1960201–1961884 (+)4.754e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)7.435e-14
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)3.362e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.112e-11