Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45803

Metabolite ID
P45803
Deionized mass
424.2697 Da
Average m/z
425.2750
Average RT
23.5752
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)3.049e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.496e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.894e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.49e-11
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)3.262e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)3.326e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)7.93e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.635e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.446e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)8.733e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.064e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.104e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.774e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.639e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.639e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.639e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.688e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.123e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.123e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)6.625e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)6.625e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.496e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.496e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.379e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.253e-12
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)6.007e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)5.905e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)4.345e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)1.984e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)1.984e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.231e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.231e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)1.984e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.631e-11
Glyma.07G136100 hypothetical protein NA 1Chr07:16113273–16117600 (+)3.237e-14
Glyma.07G136200 hypothetical protein NA 1Chr07:16129570–16134128 (+)7.524e-13
Glyma.07G136500 hypothetical protein AT3G53830:AT3G53830:Regulator of chromosome condensation (RCC1) family protein 1Chr07:16157535–16169721 (+)3.237e-14
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.25e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.39e-12
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)8.658e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.373e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.373e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.479e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.343e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.343e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.016e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.221e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.775e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.221e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.221e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.623e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.192e-17
Glyma.15G140500 hypothetical protein NA 1Chr15:11496139–11502209 (-)3.567e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.291e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.455e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)7.286e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)3.002e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)6.582e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.441e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.693e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.741e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.239e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.238e-14