Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45655

Metabolite ID
P45655
Deionized mass
579.8420 Da
Average m/z
580.8480
Average RT
23.4832
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.273e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.559e-16
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.536e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 2Chr06:49315918–49324382 (+)1.446e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.463e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.273e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.716e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.236e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.976e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.769e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.901e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.586e-13
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)5.864e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.559e-16
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.559e-16
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.214e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.52e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.445e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.253e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.841e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.395e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.395e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.395e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)3.042e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)5.793e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.494e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.53e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)7.843e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.177e-14
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)1.658e-12
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)1.658e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.987e-12
Glyma.14G201900 hypothetical protein AT1G32210:ATDAD1:Defender against death (DAD family) protein__AT2G35520:DAD2:Defender against death (DAD family) protein 1Chr14:46736415–46739060 (-)3.464e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)2.575e-14
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)2.575e-14
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)1.493e-14
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)1.605e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)8.011e-14
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)7.483e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.612e-19
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.867e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.172e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.329e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.325e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.934e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.158e-13
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.98e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.192e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.142e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.18e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.18e-11
Glyma.18G130600 hypothetical protein NA 1Chr18:18170212–18172230 (+)3.151e-11
Glyma.18G184200 hypothetical protein NA 1Chr18:44364673–44366631 (-)2.625e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.918e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.052e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.052e-14
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)1.943e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.166e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.705e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.536e-12