Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45203

Metabolite ID
P45203
Deionized mass
193.5734 Da
Average m/z
194.5801
Average RT
23.0892
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
104
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

104 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.933e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.323e-13
Glyma.20G122600 hypothetical protein AT2G01130:AT2G01130:DEA(D/H)-box RNA helicase family protein 3Chr20:36527607–36546140 (-)9.681e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.711e-14
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.834e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.834e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.834e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.024e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)9.67e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.566e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.307e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.307e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.226e-11
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)4.881e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)6.217e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.933e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)4.985e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.293e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.711e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.305e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.781e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)9.217e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.983e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.746e-20
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)2.891e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.425e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.907e-16
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.543e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.543e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.746e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.586e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.586e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.586e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.095e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.775e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.391e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.675e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.274e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.274e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.323e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.323e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.964e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.135e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.711e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.711e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.711e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.711e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)5.678e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.131e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.744e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.481e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.834e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.834e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.834e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.834e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.834e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.257e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.144e-12
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)1.117e-11
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)2.532e-12
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)2.532e-12
Glyma.11G185000 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25310949–25318127 (+)1.463e-11
Glyma.11G185200 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25361462–25369894 (+)1.463e-11
Glyma.11G185300 hypothetical protein AT3G44540:FAR4:fatty acid reductase 4 1Chr11:25389935–25398374 (-)1.463e-11
Glyma.11G185500 hypothetical protein AT5G20890:AT5G20890:TCP-1/cpn60 chaperonin family protein 1Chr11:25416977–25424958 (-)1.463e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.117e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.117e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.415e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)3.584e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.331e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.331e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.539e-12
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)4.586e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.736e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.736e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.307e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.622e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.397e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)9.184e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.73e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.55e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.73e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.73e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.691e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.88e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.19e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.464e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)9.615e-14
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)6.981e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.147e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.293e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.05e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.05e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)4.583e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)4.583e-12
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)7.954e-12
Glyma.18G107800 hypothetical protein AT1G06500:AT1G06500:uncharacterized protein 1Chr18:12208710–12212011 (-)6.874e-12
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 1Chr18:12220182–12260477 (+)6.875e-12
Glyma.18G108000 hypothetical protein NA 1Chr18:12221736–12225257 (-)6.875e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)8.677e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)2.398e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)4.407e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.467e-11
Glyma.20G122300 hypothetical protein NA 1Chr20:36506583–36511326 (-)9.681e-11