Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45069

Metabolite ID
P45069
Deionized mass
640.3428 Da
Average m/z
641.3499
Average RT
23.0365
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G276300 hypothetical protein NA 2Chr06:46741410–46744086 (-)7.036e-14
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.214e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.214e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.214e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)6.086e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.447e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.366e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.465e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.462e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.516e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.165e-11
Glyma.06G276200 hypothetical protein NA 1Chr06:46728794–46731595 (-)9.802e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)1.595e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.214e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.214e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.214e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.961e-14
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.214e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.214e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.276e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)2.69e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.395e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.296e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.296e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.296e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.296e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.516e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)9.493e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)5.559e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)5.559e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.586e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.627e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.586e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.586e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.835e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)7.87e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)7.87e-11
Glyma.16G105900 hypothetical protein NA 1Chr16:21413295–21415501 (+)3.207e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)7.87e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.207e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.086e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.344e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.633e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)6.079e-13
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.648e-13
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)6.133e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)8.44e-11