Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P44427

Metabolite ID
P44427
Deionized mass
479.2178 Da
Average m/z
480.2270
Average RT
22.6427
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)1.126e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)2.574e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.574e-12
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 2Chr12:35879106–35881779 (+)4.165e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.768e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.768e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.037e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.55e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.55e-11
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)1.379e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)8.864e-11
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)9.667e-11
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)3.831e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.039e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.677e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.871e-12
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)8.419e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.957e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.957e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.957e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.223e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.293e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.242e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.242e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.496e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.496e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.823e-11
Glyma.07G077700 hypothetical protein NA 1Chr07:7078817–7101299 (+)2.133e-11
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)1.492e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.517e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.574e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.574e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.734e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.574e-12
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)9.595e-14
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)4.397e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.173e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.221e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.787e-12
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)8.645e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)4.059e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)4.869e-11
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.841e-11
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)4.165e-11
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)4.165e-11
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)4.165e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.665e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.666e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.741e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.741e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.768e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.147e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.604e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.31e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.31e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.224e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.875e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.032e-14
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)7.949e-16
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)7.949e-16
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)7.949e-16
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.162e-12
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)2.986e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)2.986e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.234e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.05e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.472e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)5.658e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)3.44e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)3.789e-11
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)4.165e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)9.397e-12
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)9.397e-12
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)9.397e-12