Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43990

Metabolite ID
P43990
Deionized mass
919.5719 Da
Average m/z
920.5758
Average RT
22.3824
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
94
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

94 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.384e-11
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.669e-14
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)4.145e-14
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)4.544e-16
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)6.398e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)9.815e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.05e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.05e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.05e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.63e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.384e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.751e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)7.182e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.409e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.971e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.275e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.146e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.499e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.499e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)8.209e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)1.402e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)1.402e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.904e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.329e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.94e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.418e-14
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.064e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.294e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)8.827e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)8.827e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)8.827e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.109e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.496e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.538e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.034e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.196e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.832e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.145e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.145e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.145e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.145e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.307e-16
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.139e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.139e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.497e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.358e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.779e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.744e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.57e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.769e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.329e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.05e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.05e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.05e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.05e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.05e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.927e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.221e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.665e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.665e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.665e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.665e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.745e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.662e-14
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.877e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.163e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.005e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)3.175e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.14e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.63e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.995e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.024e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.911e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)6.287e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.044e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.791e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)8.196e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.825e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.825e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.319e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.319e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.102e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.137e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.647e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.647e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)7.354e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)5.562e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.954e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.149e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.059e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.491e-13
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)5.209e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.356e-14
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.309e-12