Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43949

Metabolite ID
P43949
Deionized mass
279.1813 Da
Average m/z
280.1891
Average RT
22.3555
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
119
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

119 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)4.616e-12
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)9.272e-15
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 3Chr16:30388030–30390647 (-)1.529e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)6.412e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)7.76e-13
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)4.036e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)4.724e-17
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 2Chr07:6307073–6313498 (-)1.315e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.721e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.13e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.13e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.115e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.719e-11
Glyma.14G172600 hypothetical protein AT1G34580:AT1G34580:Major facilitator superfamily protein 2Chr14:42702411–42715516 (+)9.998e-11
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)1.255e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.824e-13
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)1.489e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.344e-18
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.123e-21
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)6.142e-13
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)8.512e-18
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.331e-11
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)2.096e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)6.161e-13
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)1.384e-12
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)1.384e-12
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)1.384e-12
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)5.274e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.239e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.287e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.599e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.339e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.789e-13
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)9.179e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.135e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.818e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.954e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.054e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.118e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.053e-13
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.62e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.602e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.602e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.602e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.176e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.253e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.253e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.477e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.53e-13
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.15e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)2.101e-11
Glyma.07G070200 hypothetical protein AT1G20930:CDKB2;2:cyclin-dependent kinase B2;2 1Chr07:6362067–6364280 (+)1.158e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)4.565e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.888e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)7.552e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.722e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.57e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.506e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.506e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)6.454e-11
Glyma.08G303300 hypothetical protein NA 1Chr08:42134782–42139026 (+)1.06e-13
Glyma.08G303400 hypothetical protein NA 1Chr08:42139097–42147365 (+)1.06e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.001e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.001e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.721e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.256e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.256e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.13e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.2e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.386e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.719e-11
Glyma.14G172900 hypothetical protein NA 1Chr14:42766407–42769069 (+)9.998e-11
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)4.793e-12
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)3.195e-11
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)1.436e-11
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)8.614e-11
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)8.614e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)1.341e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.81e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.336e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.81e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.81e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.536e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.944e-16
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.284e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.953e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.953e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.953e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.616e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.664e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.823e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.109e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.98e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.334e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)1.399e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)2.533e-12
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)2.533e-12
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)1.126e-11
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)1.126e-11
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)1.126e-11
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)1.126e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)7.308e-19
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)1.489e-12
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)1.173e-11
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)2.331e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.745e-13
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)6.517e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.123e-21
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)6.142e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.603e-20
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)8.398e-15
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)4.839e-15
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)6.207e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.139e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.051e-11
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)9.963e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)8.488e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.183e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.183e-12