Overview Annotation GWAS Evidence Associated genes

P43938

Metabolite ID
P43938
Deionized mass
560.3686 Da
Average m/z
561.3743
Average RT
22.3490
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
8
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

8 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G137700 hypothetical protein AT3G59660:AT3G59660:C2 domain-containing protein / GRAM domain-containing protein 2Chr02:14232594–14257011 (-)5.364e-12
Glyma.02G060000 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr02:5433060–5441221 (+)1.154e-14
Glyma.02G086500 hypothetical protein AT1G14750:SDS:Cyclin family protein 1Chr02:7532871–7538307 (+)7.914e-11
Glyma.02G137400 hypothetical protein AT1G05710:AT1G05710:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr02:14214097–14219443 (+)5.364e-12
Glyma.02G137600 hypothetical protein AT1G05720:AT1G05720:selenoprotein family protein 1Chr02:14228005–14231025 (-)5.364e-12
Glyma.02G137800 hypothetical protein AT3G59670:AT3G59670:elongation factor 1Chr02:14259785–14264648 (+)5.364e-12
Glyma.12G020400 hypothetical protein AT1G51500:ABCG12:ABC-2 type transporter family protein 1Chr12:1445666–1452363 (-)5.319e-11
Glyma.16G059500 hypothetical protein AT3G01810:AT3G01810:EEIG1/EHBP1 protein amino-terminal domain protein 1Chr16:5808140–5814943 (-)3.838e-11