Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43847

Metabolite ID
P43847
Deionized mass
663.4039 Da
Average m/z
664.4119
Average RT
22.2934
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
147
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

147 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.488e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.532e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.489e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.693e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.902e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)6.701e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.12e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.577e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.889e-16
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.89e-16
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.89e-16
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.788e-13
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)6.667e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.806e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.806e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)4.57e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)2.976e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.532e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.314e-16
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.966e-15
Glyma.20G013100 hypothetical protein NA 2Chr20:1134080–1135710 (-)3.657e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)9.749e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.18e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.683e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)6.729e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)6.729e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)6.729e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)6.729e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)6.729e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)6.729e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)6.729e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)6.701e-14
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)2.142e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.447e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.733e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)4.737e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.47e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.687e-11
Glyma.04G044600 hypothetical protein NA 1Chr04:3556928–3559705 (-)4.169e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.53e-13
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)7.387e-13
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)7.387e-13
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)7.387e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.221e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.312e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.312e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.827e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.633e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.633e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.633e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.488e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.737e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.102e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.586e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.019e-16
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.49e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.49e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.341e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.313e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)6.586e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.586e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)5.437e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.1e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.12e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.12e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.12e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.12e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.464e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.686e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.007e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.089e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.907e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.011e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)5.994e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.899e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.536e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.889e-16
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.889e-16
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.89e-16
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.296e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.89e-16
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.89e-16
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.086e-15
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)4.611e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.347e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.31e-16
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.31e-16
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.31e-16
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.31e-16
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)2.186e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.986e-12
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)2.186e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.35e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.769e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.552e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.552e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.552e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.552e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.215e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.215e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.215e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.565e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.564e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.132e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.132e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.055e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.055e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.806e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.799e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)8.355e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.288e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.068e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.986e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.068e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.068e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.131e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.984e-14
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)5.138e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)4.023e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.005e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.493e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.257e-13
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)1.49e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.254e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.163e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.149e-13
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)3.041e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.962e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.222e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.984e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.47e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)7.267e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.902e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.563e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.563e-12
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)6.699e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)6.873e-11
Glyma.18G052300 hypothetical protein NA 1Chr18:4521958–4525815 (+)7.924e-11
Glyma.18G252200 hypothetical protein NA 1Chr18:53899264–53899758 (+)1.572e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.305e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.305e-13
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)8.359e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)7.052e-11
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 1Chr20:34184591–34191923 (+)5.581e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.901e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.602e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)6.741e-12