Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43237

Metabolite ID
P43237
Deionized mass
497.3053 Da
Average m/z
498.3107
Average RT
21.9349
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.514e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)5.884e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)8.174e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.88e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.36e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.112e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.112e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.205e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.299e-12
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)2.269e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.66e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.277e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.499e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.359e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.347e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.422e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.055e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.124e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.38e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.036e-15
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.612e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.806e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.907e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.039e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.88e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.88e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.88e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.88e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.647e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.647e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.294e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.294e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.294e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.294e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.773e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.428e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.608e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.398e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.398e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.398e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.514e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.887e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.112e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.112e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.692e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.448e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.373e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.85e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.256e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.662e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.644e-20
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.075e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)8.174e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.013e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.013e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.858e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)5.429e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.468e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.718e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.718e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.713e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.713e-11