Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42903

Metabolite ID
P42903
Deionized mass
964.5234 Da
Average m/z
965.5320
Average RT
21.7059
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.991e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.087e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)2.127e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.722e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.432e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.108e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.006e-14
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.574e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.042e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)4.096e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)6.001e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.675e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.978e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.433e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)7.698e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.155e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.155e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.155e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.73e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.032e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.128e-20
Glyma.06G013000 hypothetical protein AT4G34460:AGB1:GTP binding protein beta 1 1Chr06:966714–973712 (+)4.914e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.53e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.408e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.408e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.37e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.722e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.722e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.722e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.722e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)7.36e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.072e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.337e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)7.069e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.748e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.748e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.748e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.748e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.668e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.56e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.512e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.089e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.089e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.089e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.257e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.108e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)7.932e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.108e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.087e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.087e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)7.296e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)9.727e-12
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)7.331e-13