Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42858

Metabolite ID
P42858
Deionized mass
530.3011 Da
Average m/z
531.3125
Average RT
21.6787
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.589e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.928e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.721e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.746e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)5.991e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)8.127e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.552e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.428e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.983e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.526e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.526e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.526e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.204e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)6.415e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)6.415e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.465e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.465e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.652e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.752e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.976e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)2.556e-12
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)6.772e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.523e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.217e-16
Glyma.09G270300 hypothetical protein NA 1Chr09:48733890–48734902 (+)7.444e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.95e-11
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)2.099e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.928e-11
Glyma.14G043800 hypothetical protein NA 1Chr14:3329698–3331556 (+)2.318e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.771e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.95e-15
Glyma.15G069700 hypothetical protein AT1G11120:AT1G11120:CTTNBP 2 amino-terminal-like protein 1Chr15:5327863–5332137 (-)3.557e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.789e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.886e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.501e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.721e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.37e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.377e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.391e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.589e-11
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)8.885e-11