Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42831

Metabolite ID
P42831
Deionized mass
1098.0490 Da
Average m/z
1099.0581
Average RT
21.6606
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
118
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

118 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 4Chr18:8991445–9001857 (-)5.762e-11
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.048e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.403e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.502e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)2.608e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 2Chr05:2965889–2971412 (-)2.953e-13
Glyma.11G061000 hypothetical protein AT4G37210:AT4G37210:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr11:4576441–4579697 (+)1.391e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)1.926e-18
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.437e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.064e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.064e-12
Glyma.13G198600 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr13:31233913–31240731 (-)4.319e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.971e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.251e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)5.832e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.048e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)6.734e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)6.734e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.276e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.238e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.068e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.444e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.676e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.119e-13
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)1.864e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.492e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.065e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.184e-16
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.503e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.767e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.328e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.749e-14
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.661e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.354e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.55e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.55e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.55e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.646e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.872e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.129e-17
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)4.166e-14
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.108e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.108e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.586e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.162e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.162e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.477e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.438e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.88e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)4.43e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.228e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.396e-17
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.96e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.343e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)1.016e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.892e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.8e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.868e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.668e-14
Glyma.09G233700 hypothetical protein AT1G33430:AT1G33430:Galactosyltransferase family protein 1Chr09:45632775–45635630 (-)6.157e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)2.717e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.905e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.544e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.914e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.914e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.914e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.914e-12
Glyma.11G060700 hypothetical protein NA 1Chr11:4569714–4571506 (+)2.116e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)1.975e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.533e-14
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)7.444e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)3.016e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.926e-18
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)7.907e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)7.907e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)7.907e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.403e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.193e-14
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)7.825e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.916e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.916e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.064e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)9.63e-13
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)2.173e-12
Glyma.13G198800 hypothetical protein NA 1Chr13:31252110–31257733 (-)4.319e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.402e-15
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.251e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.825e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)2.521e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)8.315e-11
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)9.126e-11
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)9.126e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.232e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.362e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.232e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.232e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.837e-15
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.268e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.929e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)2.726e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.395e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.318e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.963e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.995e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.502e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.447e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)3.535e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.949e-11
Glyma.17G219300 hypothetical protein AT1G48270:GCR1:G-protein-coupled receptor 1 1Chr17:37088115–37094715 (+)3.997e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)5.418e-13
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)5.762e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)7.854e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)7.562e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)6.331e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)6.331e-12
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)2.752e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.133e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.272e-11