Overview Annotation GWAS Evidence Associated genes

P42674

Metabolite ID
P42674
Deionized mass
640.3459 Da
Average m/z
641.3511
Average RT
21.5857
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
137
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

137 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)4.511e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)6.24e-13
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)4.112e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.709e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.288e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.844e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.001e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)4.276e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)7.549e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.777e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.777e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.031e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)6.659e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.731e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.671e-15
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)1.796e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.022e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.022e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)3.089e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.952e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.653e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.449e-14
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.93e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)5.015e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)1.92e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)5.354e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.396e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.775e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.962e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.895e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.371e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)2.779e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.7e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.143e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.678e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.734e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.901e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.918e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.573e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.573e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.573e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)8.662e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.43e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.763e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.205e-14
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.763e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.763e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.205e-14
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.557e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)5.619e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.709e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.709e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.484e-12
Glyma.06G319500 hypothetical protein NA 1Chr06:50828930–50845232 (-)7.546e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)7.02e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.631e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.881e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.144e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)9.771e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)3.679e-12
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)3.245e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)1.557e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)6.817e-11
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr08:14749219–14752814 (-)3.249e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)7.284e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.02e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.448e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.717e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.66e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)4.286e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.019e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.381e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.229e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.093e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.093e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.093e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.618e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.618e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.653e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.653e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.062e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.062e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.103e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.668e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.289e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.289e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.945e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.288e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.777e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.777e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.856e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.778e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.177e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.6e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.213e-15
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.288e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.288e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.855e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.233e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.031e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.884e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.884e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.493e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.493e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.89e-18
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.184e-17
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.891e-18
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.891e-18
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.157e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.648e-18
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)7.398e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.185e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.706e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.582e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.108e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.001e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.001e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.15e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.718e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.962e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.838e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.197e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.323e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.323e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.885e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.896e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.274e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)8.314e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)5.935e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)4.623e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)3.213e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)3.213e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.114e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.429e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.727e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.727e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.914e-11