Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42614

Metabolite ID
P42614
Deionized mass
341.2564 Da
Average m/z
342.2618
Average RT
21.5322
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.738e-17
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)6.514e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.146e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.146e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.695e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.695e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.272e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.778e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.397e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.922e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.922e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.068e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.623e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.623e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.623e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.703e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.308e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.648e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.649e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.498e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.637e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.188e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.92e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.92e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.926e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.926e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.146e-12
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)6.229e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.895e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.075e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.345e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)8.387e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)2.606e-11
Glyma.16G207200 hypothetical protein AT2G44150:ASHH3:histone-lysine N-methyltransferase ASHH3 1Chr16:36705861–36716997 (+)8.784e-12
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)1.922e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.843e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.843e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.865e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.141e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.141e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.62e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.518e-14