Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42445

Metabolite ID
P42445
Deionized mass
262.1545 Da
Average m/z
263.1625
Average RT
21.3921
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)5.874e-17
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.323e-15
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.908e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.3e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.112e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.91e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)2.904e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.562e-12
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)5.334e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.598e-12
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)4.795e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.393e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.054e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.752e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.637e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.866e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.742e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)3.464e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)9.903e-12
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)8.886e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)8.886e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)2.031e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)2.031e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)4.814e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.351e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.301e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.276e-12
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)4.133e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.377e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.94e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.188e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.583e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.178e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.901e-16
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.901e-16
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.417e-17
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.291e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.291e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.291e-16
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.284e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.207e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.661e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.886e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.599e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.599e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.536e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.633e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.708e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.581e-14
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)2.587e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.127e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.127e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.127e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.176e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.223e-11
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)6.469e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.699e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.699e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.697e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.213e-11
Glyma.08G099800 hypothetical protein NA 1Chr08:7636648–7639681 (+)9.627e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)8.763e-14
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)8.763e-14
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)3.703e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)9.866e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.91e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.91e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.91e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.91e-11
Glyma.08G124200 hypothetical protein AT1G30500:NF-YA7:nuclear factor Y, subunit A7 1Chr08:9531363–9535558 (+)4.576e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.335e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.02e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.482e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.198e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.301e-14
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)2.594e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.536e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.502e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.502e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.502e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.502e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.678e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.159e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.587e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.587e-12
Glyma.13G067900 hypothetical protein NA 1Chr13:16787469–16789119 (+)2.732e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.323e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.914e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.446e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.94e-15
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)5.334e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.598e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.724e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.367e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.724e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.724e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.62e-13
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)8.554e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)8.554e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.47e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.776e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.169e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.169e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)5.848e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.971e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.484e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.484e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)2.219e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)2.219e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)2.219e-11
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)4.795e-12
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)4.795e-12
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)4.795e-12
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)4.795e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.302e-12
Glyma.18G045000 hypothetical protein AT5G45130:RHA1:Ras small GTP-binding family protein 1Chr18:3889384–3895138 (-)2.525e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.085e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.371e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)4.47e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)9.194e-11