Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42317

Metabolite ID
P42317
Deionized mass
1052.5352 Da
Average m/z
1053.5421
Average RT
21.3209
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G216700 hypothetical protein NA 3Chr15:35649229–35652466 (-)1.756e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.638e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 2Chr06:49315918–49324382 (+)6.828e-13
Glyma.15G216900 hypothetical protein NA 2Chr15:35680524–35686654 (-)1.756e-14
Glyma.15G223600 hypothetical protein NA 2Chr15:40694344–40709542 (+)1.996e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.934e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.43e-12
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)3.944e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.163e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.058e-12
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)8.97e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.467e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.467e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)6.828e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.184e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.184e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.184e-13
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)5.005e-12
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)5.631e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.369e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.369e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.451e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.165e-16
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)5.812e-14
Glyma.15G216800 hypothetical protein NA 1Chr15:35673556–35678305 (-)4.82e-11
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)1.756e-14
Glyma.15G219200 hypothetical protein NA 1Chr15:37859579–37901021 (-)1.727e-11
Glyma.15G222600 hypothetical protein NA 1Chr15:40455677–40458003 (+)4.214e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)8.292e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.934e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.638e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.638e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.638e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.638e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)9.847e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.464e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.674e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)4.401e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)8.528e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)8.528e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.628e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)2.26e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.531e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.32e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)7.582e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.358e-12