Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41978

Metabolite ID
P41978
Deionized mass
745.9516 Da
Average m/z
746.9580
Average RT
21.0740
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.347e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.619e-11
Glyma.07G058900 hypothetical protein NA 2Chr07:5268461–5272348 (+)1.009e-15
Glyma.07G059200 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 2Chr07:5284646–5293001 (-)2.416e-15
Glyma.07G059300 hypothetical protein AT2G39780:RNS2:ribonuclease 2 2Chr07:5293201–5300088 (-)4.169e-11
Glyma.07G059400 hypothetical protein NA 2Chr07:5305964–5316002 (+)9.093e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.538e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.101e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.238e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.287e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.204e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)3.065e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.579e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)4.457e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.173e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.611e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.747e-11
Glyma.07G058600 hypothetical protein AT5G12230:MED19A:mediator of RNA polymerase II transcription subunit 19a-like protein 1Chr07:5240996–5247125 (-)1.846e-16
Glyma.07G058700 hypothetical protein AT1G30240:AT1G30240:proline-, glutamic acid/leucine-rich protein 1Chr07:5251199–5260710 (+)1.846e-16
Glyma.07G059100 hypothetical protein NA 1Chr07:5282519–5283075 (-)2.416e-15
Glyma.07G059600 hypothetical protein AT2G04039:AT2G04039:DUF2996 family protein 1Chr07:5317552–5319355 (-)1.147e-12
Glyma.07G059800 hypothetical protein AT3G25530:GLYR1:glyoxylate reductase 1 1Chr07:5326726–5333569 (+)6.444e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.538e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.538e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.538e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.538e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.061e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.98e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)8.469e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.2e-13
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)2.489e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.652e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.347e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.347e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.347e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.347e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.951e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.329e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.396e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.717e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.717e-11