Overview Annotation GWAS Evidence Associated genes

P41912

Metabolite ID
P41912
Deionized mass
538.2386 Da
Average m/z
539.2490
Average RT
21.0109
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
153
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

153 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G137600 hypothetical protein NA 4Chr16:29468438–29472890 (-)6.463e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.226e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.227e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.922e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.798e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)8.019e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.97e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.777e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.66e-12
Glyma.08G338900 hypothetical protein NA 2Chr08:45536950–45543029 (-)1.416e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.208e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.352e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.922e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.922e-16
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)1.054e-11
Glyma.16G137000 hypothetical protein NA 2Chr16:29418205–29421765 (-)8.405e-13
Glyma.16G137100 hypothetical protein NA 2Chr16:29421091–29421534 (+)8.405e-13
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)2.753e-14
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)7.297e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.756e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.985e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.226e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.369e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)3.364e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.037e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.037e-14
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)4.444e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)4.444e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.279e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.027e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.403e-12
Glyma.03G027700 hypothetical protein AT3G13440:AT3G13440:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:3035702–3042238 (-)4.234e-11
Glyma.03G027800 hypothetical protein AT2G22410:SLO1:SLOW GROWTH 1 1Chr03:3038542–3039642 (-)4.234e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.205e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.288e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.161e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.229e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.229e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.273e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.598e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.598e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.598e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.289e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.298e-12
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.157e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.944e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.07e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.07e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.07e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.989e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.989e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.979e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.997e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)9.7e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)4.585e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)4.585e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.924e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.582e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.66e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.66e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.66e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.66e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.557e-11
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)1.114e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)1.114e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.896e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.554e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)6.648e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)2.311e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)2.311e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.992e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.992e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)9.688e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.015e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.346e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.346e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)9.361e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.579e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.579e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.579e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.859e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.859e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.406e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.406e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.208e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.758e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.413e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.208e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.437e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)9.483e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.352e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.575e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.575e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.922e-16
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)9.898e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.262e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.262e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)7.995e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)7.995e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)6.93e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)4.965e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.003e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.319e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.003e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.003e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.482e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.592e-14
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)2.089e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.066e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.066e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.042e-14
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)8.498e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.227e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.227e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.227e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.227e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.747e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.798e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.798e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.787e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.962e-13
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.826e-15
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.626e-12
Glyma.16G139400 hypothetical protein AT3G50870:MNP:GATA type zinc finger transcription factor family protein 1Chr16:29672011–29674023 (+)2.101e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.376e-14
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)4.586e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)4.586e-11
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)8.37e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)5.869e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.795e-15
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.402e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.795e-15
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.756e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.752e-14
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)8.15e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.317e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.391e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.179e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.179e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.559e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.615e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)7.917e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.904e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.985e-13
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)4.847e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.72e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.501e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)3.787e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.143e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.143e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.317e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.266e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.663e-14