Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41898

Metabolite ID
P41898
Deionized mass
546.7256 Da
Average m/z
547.7355
Average RT
21.0043
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.887e-11
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)2.408e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.317e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)4.619e-11
Glyma.05G031900 hypothetical protein AT5G62600:MOS14:ARM repeat superfamily protein 2Chr05:2767384–2787627 (+)3.666e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)3.322e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.535e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.513e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.837e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.534e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.397e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.607e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.607e-12
Glyma.14G110700 hypothetical protein NA 2Chr14:12508457–12517701 (-)7.904e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.642e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.583e-11
Glyma.16G173600 hypothetical protein AT5G24030:SLAH3:SLAC1 homologue 3 2Chr16:33407719–33412908 (-)7.473e-11
Glyma.16G177400 hypothetical protein NA 2Chr16:33858373–33865573 (+)2.783e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.862e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.586e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.494e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.887e-11
Glyma.01G001300 hypothetical protein AT2G07050:CAS1:cycloartenol synthase 1 1Chr01:227021–237987 (-)6.145e-11
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)7.885e-13
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)2.806e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.412e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.411e-13
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.514e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)1.171e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)1.171e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)5.197e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.066e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)5.024e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)5.66e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.932e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.382e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)3.636e-13
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)3.636e-13
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)3.052e-11
Glyma.05G103700 hypothetical protein NA 1Chr05:27632520–27637991 (+)4.711e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)8.451e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.634e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.276e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.817e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.14e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.14e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.527e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.568e-14
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)7.373e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.506e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.506e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)9.429e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.655e-14
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.157e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.837e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.837e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.837e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.837e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.615e-12
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)3.682e-11
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)5.587e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)3.682e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.981e-15
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.817e-15
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)2.469e-13
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.941e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)2.47e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.175e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.175e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.743e-14
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.093e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.093e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.972e-14
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)3.063e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.181e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.181e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.181e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)1.129e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.172e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.172e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.105e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.105e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.212e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.904e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.397e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.745e-11
Glyma.13G065600 hypothetical protein NA 1Chr13:16549494–16554820 (+)1.563e-11
Glyma.13G065700 hypothetical protein AT5G52340:EXO70A2:exocyst subunit exo70 family protein A2 1Chr13:16562147–16567390 (+)3.149e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.243e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.074e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.074e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.607e-12
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)6.023e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.702e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.047e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.275e-12
Glyma.14G095700 hypothetical protein AT2G26140:ftsh4:FTSH protease 4 1Chr14:8906064–8920433 (-)4.104e-12
Glyma.14G106800 hypothetical protein NA 1Chr14:11318685–11319684 (+)1.03e-12
Glyma.14G107400 hypothetical protein NA 1Chr14:11428320–11434905 (-)4.65e-11
Glyma.14G111000 hypothetical protein NA 1Chr14:12575744–12578831 (+)7.904e-13
Glyma.14G111100 hypothetical protein NA 1Chr14:12580488–12588442 (-)3.32e-11
Glyma.14G111200 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 1Chr14:12601017–12603432 (-)3.32e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.642e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.174e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.105e-13
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)2.408e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)2.408e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.261e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.745e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.583e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)5.096e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.368e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.622e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.371e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.136e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.343e-11
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:33359317–33362446 (+)1.151e-12
Glyma.16G176900 hypothetical protein NA 1Chr16:33828244–33834767 (+)2.783e-11
Glyma.16G177000 hypothetical protein NA 1Chr16:33837701–33839617 (-)2.783e-11
Glyma.16G177500 hypothetical protein AT5G52790:AT5G52790:CBS domain protein with a domain protein (DUF21) 1Chr16:33867232–33871770 (-)9.633e-11
Glyma.16G177700 hypothetical protein NA 1Chr16:33877620–33880324 (-)9.633e-11
Glyma.16G177800 hypothetical protein AT5G52780:AT5G52780:transmembrane protein, putative (DUF3464) 1Chr16:33882991–33884754 (+)9.059e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.389e-15
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)2.896e-11
Glyma.16G180800 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 1Chr16:34164228–34171821 (+)1.676e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.898e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.978e-11
Glyma.16G218700 hypothetical protein AT5G22110:DPB2:DNA polymerase epsilon subunit B2 1Chr16:37608196–37613873 (+)6.459e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)3.84e-13
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)6.355e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.123e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)7.591e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.862e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.437e-14
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.99e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.754e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.494e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.535e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.535e-14
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.721e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.788e-11