P41862
Metabolite ID
P41862
Deionized mass
474.0438 Da
Average m/z
475.0510
Average RT
20.9792
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
107
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
107 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 6.955e-16 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 3 | Chr13:31727841–31735910 (-) | 2.388e-14 | |
| Glyma.16G114900 | hypothetical protein | NA | 3 | Chr16:25456379–25485759 (+) | 4.448e-13 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 3 | Chr16:26324650–26336836 (+) | 9.106e-16 | |
| Glyma.16G118400 | hypothetical protein | AT2G17190:AT2G17190:ubiquitin family protein | 3 | Chr16:26356863–26371741 (-) | 3.988e-12 | |
| Glyma.02G188300 | hypothetical protein | NA | 2 | Chr02:35008552–35027979 (-) | 7.035e-11 | |
| Glyma.03G242800 | hypothetical protein | AT4G08630:AT4G08630:fas-binding factor-like protein | 2 | Chr03:44064511–44073939 (+) | 1.096e-11 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 2.029e-13 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 2 | Chr13:31720004–31725252 (+) | 2.388e-14 | |
| Glyma.16G111500 | hypothetical protein | AT4G35500:AT4G35500:Protein kinase superfamily protein | 2 | Chr16:24626024–24635513 (+) | 4.877e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 2 | Chr16:26234552–26238233 (-) | 7.658e-15 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 6.955e-16 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 2 | Chr20:34984922–34988496 (+) | 1.182e-12 | |
| Glyma.01G037200 | hypothetical protein | NA | 1 | Chr01:3946315–3948100 (-) | 3.939e-12 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 5.832e-11 | |
| Glyma.02G193800 | hypothetical protein | AT5G06470:AT5G06470:Glutaredoxin family protein | 1 | Chr02:36706657–36712744 (-) | 2.72e-11 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 1.589e-11 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 1.46e-11 | |
| Glyma.03G018600 | hypothetical protein | AT2G45695:AT2G45695:Ubiquitin related modifier 1 | 1 | Chr03:1859210–1862572 (-) | 7.082e-11 | |
| Glyma.03G018800 | hypothetical protein | AT2G45680:TCP9:TCP family transcription factor | 1 | Chr03:1875182–1876855 (+) | 1.276e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 4.706e-13 | |
| Glyma.03G040600 | hypothetical protein | AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 | 1 | Chr03:5113019–5121557 (+) | 6.098e-11 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 2.371e-14 | |
| Glyma.04G116900 | hypothetical protein | NA | 1 | Chr04:13696275–13700803 (+) | 8.895e-12 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 5.584e-14 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 5.308e-14 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 5.308e-14 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 1.322e-15 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 3.298e-15 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 3.298e-15 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 3.298e-15 | |
| Glyma.05G224700 | hypothetical protein | NA | 1 | Chr05:40351005–40361888 (+) | 3.24e-11 | |
| Glyma.05G226000 | hypothetical protein | AT5G19730:AT5G19730:Pectin lyase-like superfamily protein | 1 | Chr05:40458098–40461736 (+) | 4.7e-11 | |
| Glyma.05G231800 | ALDH2C1 | aldehyde dehydrogenase family 2 member C1 | AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 | 1 | Chr05:40924505–40929251 (+) | 7.195e-11 |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 1.121e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 9.88e-15 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.855e-11 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 8.972e-11 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 8.972e-11 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 8.972e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 2.939e-12 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 2.939e-12 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 7.421e-12 | |
| Glyma.06G291800 | hypothetical protein | NA | 1 | Chr06:48044194–48047197 (-) | 1.695e-11 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 7.421e-12 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 7.42e-12 | |
| Glyma.06G292200 | hypothetical protein | AT5G44290:AT5G44290:Protein kinase superfamily protein | 1 | Chr06:48100578–48107433 (-) | 1.695e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 6.978e-14 | |
| Glyma.08G122200 | hypothetical protein | NA | 1 | Chr08:9416766–9429995 (-) | 2.029e-13 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 2.029e-13 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 2.029e-13 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 2.029e-13 | |
| Glyma.08G142200 | hypothetical protein | NA | 1 | Chr08:10833827–10834390 (-) | 1.505e-11 | |
| Glyma.08G142400 | WRKY6 | WRKY transcription factor 6 | NA | 1 | Chr08:10843433–10846761 (-) | 1.505e-11 |
| Glyma.08G142900 | hypothetical protein | AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein | 1 | Chr08:10869437–10872439 (+) | 1.992e-11 | |
| Glyma.08G210200 | hypothetical protein | NA | 1 | Chr08:17010526–17012557 (+) | 5.2e-11 | |
| Glyma.08G210300 | hypothetical protein | NA | 1 | Chr08:17011623–17012548 (-) | 5.2e-11 | |
| Glyma.08G211800 | hypothetical protein | NA | 1 | Chr08:17104514–17105442 (-) | 1.714e-12 | |
| Glyma.09G016500 | hypothetical protein | NA | 1 | Chr09:1274652–1276853 (-) | 5.058e-11 | |
| Glyma.09G016800 | hypothetical protein | NA | 1 | Chr09:1300913–1311894 (+) | 8.2e-11 | |
| Glyma.09G052700 | hypothetical protein | AT1G31120:KUP10:K+ uptake permease 10 | 1 | Chr09:4617652–4626364 (+) | 7.876e-12 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 3.212e-11 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 5.147e-14 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 6.707e-12 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 6.707e-12 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 6.707e-12 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 6.707e-12 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 4.438e-12 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 1.265e-12 | |
| Glyma.12G001400 | hypothetical protein | AT1G72090:AT1G72090:Methylthiotransferase | 1 | Chr12:113763–118480 (+) | 2.923e-11 | |
| Glyma.12G001600 | PM27 | seed maturation protein PM27 | AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… | 1 | Chr12:127545–128932 (+) | 2.923e-11 |
| Glyma.12G001700 | hypothetical protein | AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein | 1 | Chr12:132389–134935 (+) | 2.923e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 8.227e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 8.227e-11 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 7.644e-14 | |
| Glyma.13G161900 | PAP25 | purple acid phosphatase | AT5G34850:PAP26:purple acid phosphatase 26 | 1 | Chr13:27748190–27752685 (-) | 3.68e-11 |
| Glyma.13G203600 | hypothetical protein | AT5G13490:AAC2:ADP/ATP carrier 2 | 1 | Chr13:31753843–31756013 (-) | 4.856e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 2.387e-14 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 9.799e-15 | |
| Glyma.14G068500 | hypothetical protein | NA | 1 | Chr14:5741909–5745574 (-) | 5.624e-12 | |
| Glyma.14G093100 | hypothetical protein | NA | 1 | Chr14:8654730–8655892 (-) | 6.514e-11 | |
| Glyma.14G094200 | hypothetical protein | AT5G11840:AT5G11840:YCF36, putative (DUF1230) | 1 | Chr14:8770378–8774149 (-) | 2.187e-11 | |
| Glyma.14G094300 | hypothetical protein | NA | 1 | Chr14:8771316–8772515 (+) | 2.187e-11 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 5.126e-13 | |
| Glyma.14G201800 | hypothetical protein | AT5G58390:AT5G58390:Peroxidase superfamily protein | 1 | Chr14:46728613–46733836 (+) | 8.884e-11 | |
| Glyma.14G204400 | hypothetical protein | AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 | 1 | Chr14:46936057–46943868 (-) | 5.151e-11 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.705e-13 | |
| Glyma.16G111100 | hypothetical protein | NA | 1 | Chr16:24438458–24444801 (+) | 4.877e-11 | |
| Glyma.16G112600 | hypothetical protein | NA | 1 | Chr16:25015407–25020098 (-) | 7.362e-12 | |
| Glyma.16G113000 | hypothetical protein | NA | 1 | Chr16:25112070–25116073 (+) | 1.034e-11 | |
| Glyma.16G115300 | hypothetical protein | NA | 1 | Chr16:25584135–25585667 (+) | 4.448e-13 | |
| Glyma.16G115400 | hypothetical protein | NA | 1 | Chr16:25604547–25606360 (+) | 4.448e-13 | |
| Glyma.16G115500 | hypothetical protein | NA | 1 | Chr16:25622503–25630816 (+) | 4.448e-13 | |
| Glyma.16G115600 | hypothetical protein | AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr16:25661245–25664376 (-) | 4.448e-13 | |
| Glyma.16G116200 | hypothetical protein | AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein | 1 | Chr16:25892277–25904773 (+) | 3.537e-11 | |
| Glyma.16G116500 | hypothetical protein | AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein | 1 | Chr16:26057276–26069534 (+) | 2.758e-11 | |
| Glyma.16G117700 | hypothetical protein | NA | 1 | Chr16:26279957–26283458 (+) | 7.538e-12 | |
| Glyma.16G118200 | hypothetical protein | NA | 1 | Chr16:26337169–26338323 (+) | 3.988e-12 | |
| Glyma.16G118600 | hypothetical protein | NA | 1 | Chr16:26442194–26445922 (+) | 3.988e-12 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 5.203e-13 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 1.65e-16 | |
| Glyma.16G189000 | hypothetical protein | NA | 1 | Chr16:35160485–35167548 (-) | 2.911e-11 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 2.029e-11 | |
| Glyma.16G189200 | hypothetical protein | AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein | 1 | Chr16:35177846–35179798 (+) | 5.424e-12 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 5.739e-11 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 6.347e-16 | |
| Glyma.20G106900 | hypothetical protein | NA | 1 | Chr20:34962043–34967985 (+) | 9.605e-11 |